Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02907 and H281DRAFT_02908 are separated by 138 nucleotides H281DRAFT_02908 and H281DRAFT_02909 are separated by 494 nucleotides H281DRAFT_02909 and H281DRAFT_02910 are separated by 125 nucleotides
H281DRAFT_02907: H281DRAFT_02907 - arginine:pyruvate transaminase, at 515,339 to 516,526
_02907
H281DRAFT_02908: H281DRAFT_02908 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 516,665 to 518,146
_02908
H281DRAFT_02909: H281DRAFT_02909 - Predicted periplasmic or secreted lipoprotein, at 518,641 to 518,979
_02909
H281DRAFT_02910: H281DRAFT_02910 - conserved hypothetical protein, at 519,105 to 519,554
_02910
Position (kb) 516
517
518
519 Strain fitness (log2 ratio) -1
0
1
2 at 515.725 kb on - strand, within H281DRAFT_02907 at 516.142 kb on - strand, within H281DRAFT_02907 at 516.150 kb on + strand, within H281DRAFT_02907 at 516.333 kb on + strand, within H281DRAFT_02907 at 516.333 kb on + strand, within H281DRAFT_02907 at 516.334 kb on - strand, within H281DRAFT_02907 at 516.484 kb on + strand at 516.484 kb on + strand at 516.484 kb on + strand at 516.485 kb on - strand at 516.519 kb on + strand at 516.520 kb on - strand at 516.930 kb on + strand, within H281DRAFT_02908 at 516.930 kb on + strand, within H281DRAFT_02908 at 516.935 kb on - strand, within H281DRAFT_02908 at 517.186 kb on - strand, within H281DRAFT_02908 at 517.186 kb on - strand, within H281DRAFT_02908 at 517.281 kb on + strand, within H281DRAFT_02908 at 517.281 kb on + strand, within H281DRAFT_02908 at 517.281 kb on + strand at 517.638 kb on + strand, within H281DRAFT_02908 at 517.819 kb on - strand, within H281DRAFT_02908 at 517.819 kb on - strand, within H281DRAFT_02908 at 518.024 kb on - strand at 518.835 kb on + strand, within H281DRAFT_02909 at 518.835 kb on + strand, within H281DRAFT_02909 at 519.107 kb on - strand at 519.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 515,725 - H281DRAFT_02907 0.32 +0.1 516,142 - H281DRAFT_02907 0.68 +0.4 516,150 + H281DRAFT_02907 0.68 -0.2 516,333 + H281DRAFT_02907 0.84 +0.8 516,333 + H281DRAFT_02907 0.84 -0.2 516,334 - H281DRAFT_02907 0.84 +0.3 516,484 + +0.2 516,484 + -0.5 516,484 + -0.5 516,485 - +0.1 516,519 + +0.4 516,520 - +0.1 516,930 + H281DRAFT_02908 0.18 +0.8 516,930 + H281DRAFT_02908 0.18 +0.9 516,935 - H281DRAFT_02908 0.18 +1.8 517,186 - H281DRAFT_02908 0.35 +0.8 517,186 - H281DRAFT_02908 0.35 +0.6 517,281 + H281DRAFT_02908 0.42 -0.2 517,281 + H281DRAFT_02908 0.42 +0.6 517,281 + +2.6 517,638 + H281DRAFT_02908 0.66 +0.7 517,819 - H281DRAFT_02908 0.78 -0.3 517,819 - H281DRAFT_02908 0.78 +0.5 518,024 - +0.5 518,835 + H281DRAFT_02909 0.57 +0.8 518,835 + H281DRAFT_02909 0.57 +0.4 519,107 - +0.7 519,121 + -0.2
Or see this region's nucleotide sequence