Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02890

Experiment: Hydroxy-L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02889 and H281DRAFT_02890 are separated by 163 nucleotidesH281DRAFT_02890 and H281DRAFT_02891 are separated by 123 nucleotides H281DRAFT_02889: H281DRAFT_02889 - alkyl hydroperoxide reductase subunit F, at 490,119 to 491,711 _02889 H281DRAFT_02890: H281DRAFT_02890 - peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 491,875 to 492,438 _02890 H281DRAFT_02891: H281DRAFT_02891 - transcriptional regulator, propionate catabolism operon regulatory protein, at 492,562 to 494,562 _02891 Position (kb) 491 492 493Strain fitness (log2 ratio) -1 0 1at 491.877 kb on - strandat 491.970 kb on - strand, within H281DRAFT_02890at 492.234 kb on - strand, within H281DRAFT_02890at 492.234 kb on - strand, within H281DRAFT_02890at 492.424 kb on - strandat 492.440 kb on + strandat 492.601 kb on - strandat 492.732 kb on + strandat 492.733 kb on - strandat 492.912 kb on - strand, within H281DRAFT_02891at 492.974 kb on + strand, within H281DRAFT_02891at 492.995 kb on - strand, within H281DRAFT_02891

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
remove
491,877 - -0.1
491,970 - H281DRAFT_02890 0.17 -0.4
492,234 - H281DRAFT_02890 0.64 -0.3
492,234 - H281DRAFT_02890 0.64 -0.0
492,424 - +0.2
492,440 + +0.1
492,601 - +0.1
492,732 + +0.2
492,733 - -0.1
492,912 - H281DRAFT_02891 0.17 -0.3
492,974 + H281DRAFT_02891 0.21 -0.3
492,995 - H281DRAFT_02891 0.22 -0.3

Or see this region's nucleotide sequence