Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02611

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02610 and H281DRAFT_02611 are separated by 211 nucleotidesH281DRAFT_02611 and H281DRAFT_02612 overlap by 44 nucleotides H281DRAFT_02610: H281DRAFT_02610 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 186,786 to 188,342 _02610 H281DRAFT_02611: H281DRAFT_02611 - transcriptional regulator, RpiR family, at 188,554 to 189,519 _02611 H281DRAFT_02612: H281DRAFT_02612 - Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase, at 189,476 to 190,528 _02612 Position (kb) 188 189 190Strain fitness (log2 ratio) -1 0 1 2 3 4at 188.133 kb on - strand, within H281DRAFT_02610at 188.498 kb on + strandat 188.584 kb on + strandat 188.585 kb on - strandat 188.830 kb on - strand, within H281DRAFT_02611at 189.185 kb on + strand, within H281DRAFT_02611at 189.282 kb on + strand, within H281DRAFT_02611at 189.283 kb on - strand, within H281DRAFT_02611at 189.572 kb on + strandat 189.573 kb on - strandat 189.643 kb on + strand, within H281DRAFT_02612at 190.075 kb on + strand, within H281DRAFT_02612at 190.076 kb on - strandat 190.076 kb on - strand, within H281DRAFT_02612at 190.437 kb on + strandat 190.438 kb on - strandat 190.508 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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188,133 - H281DRAFT_02610 0.87 +0.5
188,498 + +1.0
188,584 + +3.7
188,585 - +0.5
188,830 - H281DRAFT_02611 0.29 +1.7
189,185 + H281DRAFT_02611 0.65 +3.9
189,282 + H281DRAFT_02611 0.75 +3.4
189,283 - H281DRAFT_02611 0.75 +3.6
189,572 + -0.1
189,573 - -0.3
189,643 + H281DRAFT_02612 0.16 -0.0
190,075 + H281DRAFT_02612 0.57 +0.2
190,076 - +0.0
190,076 - H281DRAFT_02612 0.57 +0.6
190,437 + +1.1
190,438 - +0.2
190,508 + +0.5

Or see this region's nucleotide sequence