Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02381

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02380 and H281DRAFT_02381 are separated by 387 nucleotidesH281DRAFT_02381 and H281DRAFT_02382 are separated by 200 nucleotides H281DRAFT_02380: H281DRAFT_02380 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 542,827 to 543,993 _02380 H281DRAFT_02381: H281DRAFT_02381 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 544,381 to 545,541 _02381 H281DRAFT_02382: H281DRAFT_02382 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 545,742 to 546,797 _02382 Position (kb) 544 545 546Strain fitness (log2 ratio) -2 -1 0 1at 543.423 kb on + strand, within H281DRAFT_02380at 543.423 kb on + strand, within H281DRAFT_02380at 543.424 kb on - strand, within H281DRAFT_02380at 543.556 kb on + strand, within H281DRAFT_02380at 543.556 kb on + strand, within H281DRAFT_02380at 543.556 kb on + strand, within H281DRAFT_02380at 543.556 kb on + strand, within H281DRAFT_02380at 543.557 kb on - strand, within H281DRAFT_02380at 543.701 kb on - strand, within H281DRAFT_02380at 543.701 kb on - strand, within H281DRAFT_02380at 543.701 kb on - strand, within H281DRAFT_02380at 543.701 kb on - strand, within H281DRAFT_02380at 543.703 kb on - strand, within H281DRAFT_02380at 543.703 kb on - strand, within H281DRAFT_02380at 543.712 kb on + strand, within H281DRAFT_02380at 543.724 kb on + strand, within H281DRAFT_02380at 543.792 kb on + strand, within H281DRAFT_02380at 544.022 kb on - strandat 544.022 kb on - strandat 544.124 kb on + strandat 544.124 kb on + strandat 544.125 kb on + strandat 544.125 kb on - strandat 544.125 kb on - strandat 544.125 kb on - strandat 544.314 kb on + strandat 544.314 kb on + strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.315 kb on - strandat 544.351 kb on + strandat 544.352 kb on - strandat 544.403 kb on + strandat 544.404 kb on - strandat 544.472 kb on + strandat 544.478 kb on + strandat 544.479 kb on - strandat 544.570 kb on + strand, within H281DRAFT_02381at 544.570 kb on + strand, within H281DRAFT_02381at 544.570 kb on + strand, within H281DRAFT_02381at 544.570 kb on + strand, within H281DRAFT_02381at 544.570 kb on + strand, within H281DRAFT_02381at 544.571 kb on - strand, within H281DRAFT_02381at 544.571 kb on - strand, within H281DRAFT_02381at 544.571 kb on - strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.834 kb on + strand, within H281DRAFT_02381at 544.835 kb on - strand, within H281DRAFT_02381at 544.889 kb on - strand, within H281DRAFT_02381at 545.050 kb on - strand, within H281DRAFT_02381at 545.050 kb on - strand, within H281DRAFT_02381at 545.248 kb on + strandat 545.248 kb on + strand, within H281DRAFT_02381at 545.248 kb on + strand, within H281DRAFT_02381at 545.249 kb on - strand, within H281DRAFT_02381at 545.249 kb on - strand, within H281DRAFT_02381at 545.249 kb on - strand, within H281DRAFT_02381at 545.250 kb on + strand, within H281DRAFT_02381at 545.250 kb on + strand, within H281DRAFT_02381at 545.250 kb on + strand, within H281DRAFT_02381at 545.251 kb on - strand, within H281DRAFT_02381at 545.251 kb on - strand, within H281DRAFT_02381at 545.272 kb on + strand, within H281DRAFT_02381at 545.540 kb on - strandat 545.542 kb on + strandat 545.543 kb on - strandat 545.543 kb on - strandat 545.543 kb on - strandat 545.543 kb on - strandat 545.543 kb on - strandat 545.579 kb on - strandat 545.579 kb on - strandat 545.579 kb on - strandat 545.741 kb on + strandat 545.741 kb on + strandat 545.741 kb on + strandat 545.741 kb on + strandat 545.742 kb on - strandat 545.742 kb on - strandat 545.742 kb on - strandat 545.750 kb on - strandat 545.799 kb on + strandat 545.800 kb on - strandat 545.800 kb on - strandat 545.856 kb on - strandat 545.891 kb on + strand, within H281DRAFT_02382at 545.892 kb on - strand, within H281DRAFT_02382at 545.892 kb on - strand, within H281DRAFT_02382at 546.048 kb on + strand, within H281DRAFT_02382at 546.048 kb on + strand, within H281DRAFT_02382at 546.049 kb on - strand, within H281DRAFT_02382at 546.049 kb on - strand, within H281DRAFT_02382at 546.049 kb on - strand, within H281DRAFT_02382at 546.049 kb on - strand, within H281DRAFT_02382at 546.072 kb on + strand, within H281DRAFT_02382at 546.072 kb on + strand, within H281DRAFT_02382at 546.072 kb on + strand, within H281DRAFT_02382at 546.073 kb on - strand, within H281DRAFT_02382at 546.073 kb on - strand, within H281DRAFT_02382at 546.073 kb on - strand, within H281DRAFT_02382at 546.180 kb on + strand, within H281DRAFT_02382at 546.393 kb on + strand, within H281DRAFT_02382at 546.393 kb on + strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.394 kb on - strand, within H281DRAFT_02382at 546.399 kb on + strand, within H281DRAFT_02382

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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543,423 + H281DRAFT_02380 0.51 +0.5
543,423 + H281DRAFT_02380 0.51 +0.3
543,424 - H281DRAFT_02380 0.51 +0.2
543,556 + H281DRAFT_02380 0.62 -0.3
543,556 + H281DRAFT_02380 0.62 +1.5
543,556 + H281DRAFT_02380 0.62 -0.1
543,556 + H281DRAFT_02380 0.62 +0.6
543,557 - H281DRAFT_02380 0.63 -0.3
543,701 - H281DRAFT_02380 0.75 -0.5
543,701 - H281DRAFT_02380 0.75 +0.4
543,701 - H281DRAFT_02380 0.75 -0.9
543,701 - H281DRAFT_02380 0.75 -0.1
543,703 - H281DRAFT_02380 0.75 -0.4
543,703 - H281DRAFT_02380 0.75 +1.0
543,712 + H281DRAFT_02380 0.76 -1.2
543,724 + H281DRAFT_02380 0.77 -0.3
543,792 + H281DRAFT_02380 0.83 -0.5
544,022 - +0.1
544,022 - -1.8
544,124 + -0.6
544,124 + -0.2
544,125 + +0.2
544,125 - -0.2
544,125 - -1.1
544,125 - -0.0
544,314 + -0.5
544,314 + +0.5
544,315 - +0.2
544,315 - +0.8
544,315 - -0.2
544,315 - +0.1
544,315 - +0.1
544,315 - -0.2
544,351 + +0.4
544,352 - +0.8
544,403 + +0.7
544,404 - +0.2
544,472 + +0.6
544,478 + +0.0
544,479 - -0.9
544,570 + H281DRAFT_02381 0.16 +0.6
544,570 + H281DRAFT_02381 0.16 +0.1
544,570 + H281DRAFT_02381 0.16 -0.5
544,570 + H281DRAFT_02381 0.16 -0.1
544,570 + H281DRAFT_02381 0.16 -0.3
544,571 - H281DRAFT_02381 0.16 +0.0
544,571 - H281DRAFT_02381 0.16 -0.1
544,571 - H281DRAFT_02381 0.16 -0.9
544,834 + H281DRAFT_02381 0.39 -0.5
544,834 + H281DRAFT_02381 0.39 -0.1
544,834 + H281DRAFT_02381 0.39 -1.1
544,834 + H281DRAFT_02381 0.39 +0.2
544,834 + H281DRAFT_02381 0.39 -0.4
544,834 + H281DRAFT_02381 0.39 -1.1
544,835 - H281DRAFT_02381 0.39 +0.2
544,889 - H281DRAFT_02381 0.44 +0.3
545,050 - H281DRAFT_02381 0.58 +0.2
545,050 - H281DRAFT_02381 0.58 -0.2
545,248 + -0.2
545,248 + H281DRAFT_02381 0.75 -0.0
545,248 + H281DRAFT_02381 0.75 +0.2
545,249 - H281DRAFT_02381 0.75 -0.0
545,249 - H281DRAFT_02381 0.75 -0.2
545,249 - H281DRAFT_02381 0.75 +0.0
545,250 + H281DRAFT_02381 0.75 +0.1
545,250 + H281DRAFT_02381 0.75 +0.3
545,250 + H281DRAFT_02381 0.75 +0.6
545,251 - H281DRAFT_02381 0.75 +0.1
545,251 - H281DRAFT_02381 0.75 +0.1
545,272 + H281DRAFT_02381 0.77 -0.4
545,540 - -0.1
545,542 + -0.4
545,543 - -0.7
545,543 - -0.0
545,543 - +0.1
545,543 - -0.9
545,543 - +0.5
545,579 - +0.3
545,579 - -0.0
545,579 - -0.3
545,741 + +0.9
545,741 + -0.7
545,741 + +0.1
545,741 + -0.9
545,742 - -0.2
545,742 - -1.0
545,742 - -0.1
545,750 - +0.2
545,799 + -0.3
545,800 - -1.6
545,800 - -0.1
545,856 - +0.0
545,891 + H281DRAFT_02382 0.14 -0.1
545,892 - H281DRAFT_02382 0.14 -0.2
545,892 - H281DRAFT_02382 0.14 -0.4
546,048 + H281DRAFT_02382 0.29 -0.2
546,048 + H281DRAFT_02382 0.29 +0.1
546,049 - H281DRAFT_02382 0.29 +0.2
546,049 - H281DRAFT_02382 0.29 +0.7
546,049 - H281DRAFT_02382 0.29 +0.4
546,049 - H281DRAFT_02382 0.29 +0.9
546,072 + H281DRAFT_02382 0.31 -1.1
546,072 + H281DRAFT_02382 0.31 +0.1
546,072 + H281DRAFT_02382 0.31 -0.4
546,073 - H281DRAFT_02382 0.31 -0.0
546,073 - H281DRAFT_02382 0.31 +0.4
546,073 - H281DRAFT_02382 0.31 +0.3
546,180 + H281DRAFT_02382 0.41 +0.0
546,393 + H281DRAFT_02382 0.62 -0.8
546,393 + H281DRAFT_02382 0.62 -0.3
546,394 - H281DRAFT_02382 0.62 +0.6
546,394 - H281DRAFT_02382 0.62 -0.8
546,394 - H281DRAFT_02382 0.62 +0.5
546,394 - H281DRAFT_02382 0.62 +0.1
546,394 - H281DRAFT_02382 0.62 -0.8
546,399 + H281DRAFT_02382 0.62 +0.1

Or see this region's nucleotide sequence