Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02356

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02355 and H281DRAFT_02356 overlap by 4 nucleotidesH281DRAFT_02356 and H281DRAFT_02357 are separated by 556 nucleotides H281DRAFT_02355: H281DRAFT_02355 - type II secretion system protein E (GspE), at 511,971 to 513,530 _02355 H281DRAFT_02356: H281DRAFT_02356 - general secretion pathway protein D, at 513,527 to 515,878 _02356 H281DRAFT_02357: H281DRAFT_02357 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 516,435 to 516,842 _02357 Position (kb) 513 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1at 512.560 kb on + strand, within H281DRAFT_02355at 512.560 kb on + strand, within H281DRAFT_02355at 512.560 kb on + strand, within H281DRAFT_02355at 512.561 kb on - strand, within H281DRAFT_02355at 512.626 kb on + strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.627 kb on - strand, within H281DRAFT_02355at 512.859 kb on - strand, within H281DRAFT_02355at 512.972 kb on + strand, within H281DRAFT_02355at 512.972 kb on + strand, within H281DRAFT_02355at 513.209 kb on - strand, within H281DRAFT_02355at 513.209 kb on - strand, within H281DRAFT_02355at 513.248 kb on + strand, within H281DRAFT_02355at 513.249 kb on - strand, within H281DRAFT_02355at 513.249 kb on - strand, within H281DRAFT_02355at 513.524 kb on + strandat 513.524 kb on + strandat 513.524 kb on + strandat 513.621 kb on + strandat 513.823 kb on + strand, within H281DRAFT_02356at 513.823 kb on + strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.824 kb on - strand, within H281DRAFT_02356at 513.825 kb on + strandat 513.825 kb on + strand, within H281DRAFT_02356at 513.826 kb on - strand, within H281DRAFT_02356at 513.996 kb on + strand, within H281DRAFT_02356at 513.996 kb on + strand, within H281DRAFT_02356at 513.997 kb on - strand, within H281DRAFT_02356at 513.997 kb on - strand, within H281DRAFT_02356at 514.000 kb on + strand, within H281DRAFT_02356at 514.000 kb on + strand, within H281DRAFT_02356at 514.143 kb on + strand, within H281DRAFT_02356at 514.221 kb on + strand, within H281DRAFT_02356at 514.222 kb on - strand, within H281DRAFT_02356at 514.222 kb on - strand, within H281DRAFT_02356at 514.222 kb on - strand, within H281DRAFT_02356at 514.266 kb on + strand, within H281DRAFT_02356at 514.267 kb on - strand, within H281DRAFT_02356at 514.267 kb on - strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.282 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strandat 514.286 kb on + strand, within H281DRAFT_02356at 514.286 kb on + strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strandat 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.287 kb on - strand, within H281DRAFT_02356at 514.339 kb on + strand, within H281DRAFT_02356at 514.340 kb on - strand, within H281DRAFT_02356at 514.340 kb on - strand, within H281DRAFT_02356at 514.340 kb on - strand, within H281DRAFT_02356at 514.340 kb on - strand, within H281DRAFT_02356at 514.648 kb on + strand, within H281DRAFT_02356at 514.650 kb on + strand, within H281DRAFT_02356at 514.651 kb on - strand, within H281DRAFT_02356at 514.651 kb on - strand, within H281DRAFT_02356at 514.651 kb on - strand, within H281DRAFT_02356at 514.651 kb on - strand, within H281DRAFT_02356at 515.178 kb on - strand, within H281DRAFT_02356at 515.188 kb on + strand, within H281DRAFT_02356at 515.188 kb on + strand, within H281DRAFT_02356at 515.189 kb on - strand, within H281DRAFT_02356at 515.207 kb on - strand, within H281DRAFT_02356at 515.385 kb on + strand, within H281DRAFT_02356at 515.501 kb on + strand, within H281DRAFT_02356at 515.502 kb on - strand, within H281DRAFT_02356at 515.502 kb on - strand, within H281DRAFT_02356at 515.502 kb on - strand, within H281DRAFT_02356at 515.502 kb on - strand, within H281DRAFT_02356at 515.550 kb on + strand, within H281DRAFT_02356at 515.550 kb on + strand, within H281DRAFT_02356at 515.597 kb on + strand, within H281DRAFT_02356at 515.597 kb on + strand, within H281DRAFT_02356at 515.598 kb on - strand, within H281DRAFT_02356at 515.598 kb on - strand, within H281DRAFT_02356at 515.600 kb on + strandat 515.615 kb on + strand, within H281DRAFT_02356at 515.616 kb on - strand, within H281DRAFT_02356at 515.616 kb on - strand, within H281DRAFT_02356at 515.756 kb on + strandat 515.756 kb on + strandat 515.900 kb on + strandat 515.900 kb on + strandat 515.900 kb on + strandat 515.901 kb on - strandat 515.901 kb on - strandat 515.901 kb on - strandat 515.993 kb on - strandat 516.049 kb on - strandat 516.049 kb on - strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.186 kb on + strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.187 kb on - strandat 516.195 kb on + strandat 516.195 kb on + strandat 516.196 kb on - strandat 516.199 kb on + strandat 516.199 kb on + strandat 516.199 kb on + strandat 516.200 kb on - strandat 516.230 kb on + strandat 516.230 kb on + strandat 516.230 kb on + strandat 516.231 kb on - strandat 516.231 kb on - strandat 516.231 kb on - strandat 516.353 kb on + strandat 516.353 kb on + strandat 516.364 kb on - strandat 516.364 kb on - strandat 516.431 kb on + strandat 516.431 kb on + strandat 516.489 kb on + strand, within H281DRAFT_02357at 516.489 kb on + strand, within H281DRAFT_02357at 516.489 kb on + strand, within H281DRAFT_02357at 516.490 kb on - strand, within H281DRAFT_02357at 516.588 kb on + strand, within H281DRAFT_02357at 516.637 kb on - strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.681 kb on + strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.682 kb on - strand, within H281DRAFT_02357at 516.720 kb on + strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.721 kb on - strand, within H281DRAFT_02357at 516.728 kb on + strand, within H281DRAFT_02357at 516.728 kb on + strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.729 kb on - strand, within H281DRAFT_02357at 516.750 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.783 kb on + strand, within H281DRAFT_02357at 516.784 kb on - strand, within H281DRAFT_02357

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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512,560 + H281DRAFT_02355 0.38 -0.0
512,560 + H281DRAFT_02355 0.38 +0.1
512,560 + H281DRAFT_02355 0.38 +0.3
512,561 - H281DRAFT_02355 0.38 +0.6
512,626 + H281DRAFT_02355 0.42 +0.8
512,627 - H281DRAFT_02355 0.42 +0.7
512,627 - H281DRAFT_02355 0.42 +1.1
512,627 - H281DRAFT_02355 0.42 +0.2
512,859 - H281DRAFT_02355 0.57 -0.4
512,972 + H281DRAFT_02355 0.64 +0.4
512,972 + H281DRAFT_02355 0.64 +0.7
513,209 - H281DRAFT_02355 0.79 -1.0
513,209 - H281DRAFT_02355 0.79 -0.6
513,248 + H281DRAFT_02355 0.82 +0.0
513,249 - H281DRAFT_02355 0.82 +0.7
513,249 - H281DRAFT_02355 0.82 +0.7
513,524 + +0.2
513,524 + -0.8
513,524 + +1.2
513,621 + +1.3
513,823 + H281DRAFT_02356 0.13 +0.8
513,823 + H281DRAFT_02356 0.13 +0.0
513,824 - H281DRAFT_02356 0.13 +1.2
513,824 - H281DRAFT_02356 0.13 +1.3
513,824 - H281DRAFT_02356 0.13 -0.5
513,824 - H281DRAFT_02356 0.13 +0.6
513,824 - H281DRAFT_02356 0.13 +0.3
513,824 - H281DRAFT_02356 0.13 +0.3
513,824 - H281DRAFT_02356 0.13 -0.2
513,824 - H281DRAFT_02356 0.13 +0.7
513,824 - H281DRAFT_02356 0.13 +0.9
513,824 - H281DRAFT_02356 0.13 +0.2
513,825 + +0.5
513,825 + H281DRAFT_02356 0.13 +0.3
513,826 - H281DRAFT_02356 0.13 +0.1
513,996 + H281DRAFT_02356 0.20 -1.2
513,996 + H281DRAFT_02356 0.20 +0.3
513,997 - H281DRAFT_02356 0.20 +1.7
513,997 - H281DRAFT_02356 0.20 +0.2
514,000 + H281DRAFT_02356 0.20 +0.5
514,000 + H281DRAFT_02356 0.20 +0.2
514,143 + H281DRAFT_02356 0.26 -0.5
514,221 + H281DRAFT_02356 0.30 -0.4
514,222 - H281DRAFT_02356 0.30 +0.6
514,222 - H281DRAFT_02356 0.30 +1.4
514,222 - H281DRAFT_02356 0.30 +0.9
514,266 + H281DRAFT_02356 0.31 +0.5
514,267 - H281DRAFT_02356 0.31 +1.3
514,267 - H281DRAFT_02356 0.31 -0.3
514,282 + H281DRAFT_02356 0.32 +0.3
514,282 + H281DRAFT_02356 0.32 -0.4
514,282 + H281DRAFT_02356 0.32 +0.2
514,282 + H281DRAFT_02356 0.32 +0.0
514,282 + H281DRAFT_02356 0.32 -0.1
514,286 + H281DRAFT_02356 0.32 +0.3
514,286 + H281DRAFT_02356 0.32 -0.0
514,286 + H281DRAFT_02356 0.32 +0.4
514,286 + H281DRAFT_02356 0.32 +0.4
514,286 + H281DRAFT_02356 0.32 +0.4
514,286 + H281DRAFT_02356 0.32 +0.4
514,286 + H281DRAFT_02356 0.32 +1.1
514,286 + H281DRAFT_02356 0.32 +0.5
514,286 + H281DRAFT_02356 0.32 +0.2
514,286 + H281DRAFT_02356 0.32 +0.4
514,286 + H281DRAFT_02356 0.32 +0.4
514,286 + H281DRAFT_02356 0.32 -0.0
514,286 + H281DRAFT_02356 0.32 +0.5
514,286 + H281DRAFT_02356 0.32 +0.3
514,286 + +0.8
514,286 + H281DRAFT_02356 0.32 -0.2
514,286 + H281DRAFT_02356 0.32 -0.2
514,287 - H281DRAFT_02356 0.32 +1.7
514,287 - H281DRAFT_02356 0.32 +0.2
514,287 - H281DRAFT_02356 0.32 -0.2
514,287 - H281DRAFT_02356 0.32 +0.7
514,287 - H281DRAFT_02356 0.32 +0.5
514,287 - H281DRAFT_02356 0.32 -0.0
514,287 - H281DRAFT_02356 0.32 +0.9
514,287 - H281DRAFT_02356 0.32 +0.4
514,287 - H281DRAFT_02356 0.32 -1.7
514,287 - H281DRAFT_02356 0.32 +0.0
514,287 - H281DRAFT_02356 0.32 +0.5
514,287 - H281DRAFT_02356 0.32 +0.1
514,287 - H281DRAFT_02356 0.32 +0.8
514,287 - -1.7
514,287 - H281DRAFT_02356 0.32 +0.7
514,287 - H281DRAFT_02356 0.32 +0.8
514,287 - H281DRAFT_02356 0.32 +0.6
514,339 + H281DRAFT_02356 0.35 +1.2
514,340 - H281DRAFT_02356 0.35 +0.2
514,340 - H281DRAFT_02356 0.35 +0.7
514,340 - H281DRAFT_02356 0.35 -0.1
514,340 - H281DRAFT_02356 0.35 +0.4
514,648 + H281DRAFT_02356 0.48 +0.4
514,650 + H281DRAFT_02356 0.48 +0.6
514,651 - H281DRAFT_02356 0.48 -0.4
514,651 - H281DRAFT_02356 0.48 +0.9
514,651 - H281DRAFT_02356 0.48 +0.5
514,651 - H281DRAFT_02356 0.48 +0.4
515,178 - H281DRAFT_02356 0.70 +0.2
515,188 + H281DRAFT_02356 0.71 +0.3
515,188 + H281DRAFT_02356 0.71 +0.3
515,189 - H281DRAFT_02356 0.71 +0.4
515,207 - H281DRAFT_02356 0.71 -1.3
515,385 + H281DRAFT_02356 0.79 -0.4
515,501 + H281DRAFT_02356 0.84 +0.4
515,502 - H281DRAFT_02356 0.84 +0.0
515,502 - H281DRAFT_02356 0.84 +1.4
515,502 - H281DRAFT_02356 0.84 +0.2
515,502 - H281DRAFT_02356 0.84 +0.5
515,550 + H281DRAFT_02356 0.86 +0.2
515,550 + H281DRAFT_02356 0.86 +0.8
515,597 + H281DRAFT_02356 0.88 +0.1
515,597 + H281DRAFT_02356 0.88 +1.0
515,598 - H281DRAFT_02356 0.88 +0.3
515,598 - H281DRAFT_02356 0.88 +0.7
515,600 + +0.4
515,615 + H281DRAFT_02356 0.89 -0.1
515,616 - H281DRAFT_02356 0.89 +0.2
515,616 - H281DRAFT_02356 0.89 +1.0
515,756 + +1.1
515,756 + -0.6
515,900 + +1.1
515,900 + +0.7
515,900 + +0.5
515,901 - -0.7
515,901 - +0.8
515,901 - +1.1
515,993 - +0.2
516,049 - -0.4
516,049 - +0.5
516,186 + +1.0
516,186 + -0.3
516,186 + +0.1
516,186 + -0.4
516,186 + +0.3
516,187 - +0.8
516,187 - -0.5
516,187 - +0.0
516,187 - +0.7
516,187 - +0.1
516,195 + +0.4
516,195 + -1.3
516,196 - +0.5
516,199 + -0.3
516,199 + -0.1
516,199 + +0.1
516,200 - +0.4
516,230 + +0.1
516,230 + +0.1
516,230 + +0.4
516,231 - +1.4
516,231 - +0.5
516,231 - -2.8
516,353 + +0.0
516,353 + +0.0
516,364 - +0.1
516,364 - +0.0
516,431 + -1.1
516,431 + +0.0
516,489 + H281DRAFT_02357 0.13 -0.9
516,489 + H281DRAFT_02357 0.13 -0.1
516,489 + H281DRAFT_02357 0.13 +0.1
516,490 - H281DRAFT_02357 0.13 +0.5
516,588 + H281DRAFT_02357 0.38 -0.4
516,637 - H281DRAFT_02357 0.50 -0.0
516,681 + H281DRAFT_02357 0.60 +0.1
516,681 + H281DRAFT_02357 0.60 -1.3
516,681 + H281DRAFT_02357 0.60 -0.2
516,682 - H281DRAFT_02357 0.61 -2.2
516,682 - H281DRAFT_02357 0.61 +1.0
516,682 - H281DRAFT_02357 0.61 -0.1
516,682 - H281DRAFT_02357 0.61 -1.1
516,682 - H281DRAFT_02357 0.61 -0.6
516,682 - H281DRAFT_02357 0.61 +0.2
516,682 - H281DRAFT_02357 0.61 -0.1
516,720 + H281DRAFT_02357 0.70 -0.5
516,721 - H281DRAFT_02357 0.70 +0.2
516,721 - H281DRAFT_02357 0.70 +0.4
516,721 - H281DRAFT_02357 0.70 -0.7
516,728 + H281DRAFT_02357 0.72 -0.2
516,728 + H281DRAFT_02357 0.72 +0.5
516,729 - H281DRAFT_02357 0.72 -0.7
516,729 - H281DRAFT_02357 0.72 -1.2
516,729 - H281DRAFT_02357 0.72 +0.2
516,729 - H281DRAFT_02357 0.72 -0.0
516,729 - H281DRAFT_02357 0.72 +0.0
516,750 + H281DRAFT_02357 0.77 -0.4
516,783 + H281DRAFT_02357 0.85 +0.1
516,783 + H281DRAFT_02357 0.85 -0.1
516,783 + H281DRAFT_02357 0.85 -0.5
516,783 + H281DRAFT_02357 0.85 -1.5
516,784 - H281DRAFT_02357 0.86 +0.3

Or see this region's nucleotide sequence