Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01921

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01919 and H281DRAFT_01920 are separated by 58 nucleotidesH281DRAFT_01920 and H281DRAFT_01921 are separated by 75 nucleotidesH281DRAFT_01921 and H281DRAFT_01922 are separated by 119 nucleotides H281DRAFT_01919: H281DRAFT_01919 - Threonine/homoserine/homoserine lactone efflux protein, at 36,827 to 37,441 _01919 H281DRAFT_01920: H281DRAFT_01920 - adenine phosphoribosyltransferase, at 37,500 to 38,066 _01920 H281DRAFT_01921: H281DRAFT_01921 - Kef-type potassium/proton antiporter, CPA2 family, at 38,142 to 40,145 _01921 H281DRAFT_01922: H281DRAFT_01922 - arabinose-5-phosphate isomerase, at 40,265 to 41,314 _01922 Position (kb) 38 39 40 41Strain fitness (log2 ratio) -1 0 1 2at 37.203 kb on + strand, within H281DRAFT_01919at 37.203 kb on + strand, within H281DRAFT_01919at 37.203 kb on + strand, within H281DRAFT_01919at 37.448 kb on + strandat 37.448 kb on + strandat 37.448 kb on + strandat 37.449 kb on - strandat 37.529 kb on - strandat 37.774 kb on + strand, within H281DRAFT_01920at 37.774 kb on + strand, within H281DRAFT_01920at 37.775 kb on - strand, within H281DRAFT_01920at 37.793 kb on + strand, within H281DRAFT_01920at 37.794 kb on - strand, within H281DRAFT_01920at 37.826 kb on - strand, within H281DRAFT_01920at 37.826 kb on - strand, within H281DRAFT_01920at 37.826 kb on - strand, within H281DRAFT_01920at 37.877 kb on - strand, within H281DRAFT_01920at 37.896 kb on - strand, within H281DRAFT_01920at 37.897 kb on + strand, within H281DRAFT_01920at 37.897 kb on + strand, within H281DRAFT_01920at 37.898 kb on - strand, within H281DRAFT_01920at 38.010 kb on - strandat 38.023 kb on + strandat 38.024 kb on - strandat 38.024 kb on - strandat 38.024 kb on - strandat 38.143 kb on + strandat 38.321 kb on - strandat 38.458 kb on + strand, within H281DRAFT_01921at 38.458 kb on + strand, within H281DRAFT_01921at 38.509 kb on - strand, within H281DRAFT_01921at 38.624 kb on + strand, within H281DRAFT_01921at 38.624 kb on + strand, within H281DRAFT_01921at 38.702 kb on - strand, within H281DRAFT_01921at 38.706 kb on - strand, within H281DRAFT_01921at 38.839 kb on + strand, within H281DRAFT_01921at 38.839 kb on + strand, within H281DRAFT_01921at 38.839 kb on + strand, within H281DRAFT_01921at 38.840 kb on - strand, within H281DRAFT_01921at 39.641 kb on + strand, within H281DRAFT_01921at 39.642 kb on - strand, within H281DRAFT_01921at 39.695 kb on + strand, within H281DRAFT_01921at 39.717 kb on + strand, within H281DRAFT_01921at 39.809 kb on + strand, within H281DRAFT_01921at 39.809 kb on + strand, within H281DRAFT_01921at 39.810 kb on - strand, within H281DRAFT_01921at 39.810 kb on - strand, within H281DRAFT_01921at 39.810 kb on - strand, within H281DRAFT_01921at 39.876 kb on + strand, within H281DRAFT_01921at 39.877 kb on - strand, within H281DRAFT_01921at 39.877 kb on - strand, within H281DRAFT_01921at 39.877 kb on - strand, within H281DRAFT_01921at 40.048 kb on + strandat 40.230 kb on + strandat 40.232 kb on + strandat 40.232 kb on + strandat 40.319 kb on + strandat 40.321 kb on + strandat 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.933 kb on + strand, within H281DRAFT_01922at 40.937 kb on + strand, within H281DRAFT_01922at 40.937 kb on + strand, within H281DRAFT_01922at 40.937 kb on + strand, within H281DRAFT_01922at 40.937 kb on + strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922at 40.938 kb on - strand, within H281DRAFT_01922

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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37,203 + H281DRAFT_01919 0.61 +1.1
37,203 + H281DRAFT_01919 0.61 -0.2
37,203 + H281DRAFT_01919 0.61 -0.1
37,448 + -0.6
37,448 + +0.1
37,448 + +0.0
37,449 - +0.2
37,529 - +0.6
37,774 + H281DRAFT_01920 0.48 -0.3
37,774 + H281DRAFT_01920 0.48 +0.5
37,775 - H281DRAFT_01920 0.49 +0.4
37,793 + H281DRAFT_01920 0.52 +0.2
37,794 - H281DRAFT_01920 0.52 +0.2
37,826 - H281DRAFT_01920 0.57 +0.3
37,826 - H281DRAFT_01920 0.57 -0.9
37,826 - H281DRAFT_01920 0.57 -0.5
37,877 - H281DRAFT_01920 0.66 -0.7
37,896 - H281DRAFT_01920 0.70 +0.1
37,897 + H281DRAFT_01920 0.70 +0.3
37,897 + H281DRAFT_01920 0.70 -0.6
37,898 - H281DRAFT_01920 0.70 +1.0
38,010 - -0.4
38,023 + +0.8
38,024 - -1.0
38,024 - +0.5
38,024 - +0.4
38,143 + -0.1
38,321 - +0.2
38,458 + H281DRAFT_01921 0.16 +0.0
38,458 + H281DRAFT_01921 0.16 +0.3
38,509 - H281DRAFT_01921 0.18 +0.1
38,624 + H281DRAFT_01921 0.24 +0.1
38,624 + H281DRAFT_01921 0.24 +0.8
38,702 - H281DRAFT_01921 0.28 +0.5
38,706 - H281DRAFT_01921 0.28 +1.9
38,839 + H281DRAFT_01921 0.35 +1.0
38,839 + H281DRAFT_01921 0.35 +0.0
38,839 + H281DRAFT_01921 0.35 +1.1
38,840 - H281DRAFT_01921 0.35 -0.6
39,641 + H281DRAFT_01921 0.75 +1.5
39,642 - H281DRAFT_01921 0.75 +0.4
39,695 + H281DRAFT_01921 0.77 +0.9
39,717 + H281DRAFT_01921 0.79 +0.6
39,809 + H281DRAFT_01921 0.83 +0.7
39,809 + H281DRAFT_01921 0.83 +0.2
39,810 - H281DRAFT_01921 0.83 +1.2
39,810 - H281DRAFT_01921 0.83 +0.4
39,810 - H281DRAFT_01921 0.83 +1.2
39,876 + H281DRAFT_01921 0.87 -0.3
39,877 - H281DRAFT_01921 0.87 +1.3
39,877 - H281DRAFT_01921 0.87 +0.5
39,877 - H281DRAFT_01921 0.87 +0.3
40,048 + -1.0
40,230 + +0.4
40,232 + +0.5
40,232 + +1.0
40,319 + +0.3
40,321 + +0.6
40,933 + H281DRAFT_01922 0.64 +0.7
40,933 + H281DRAFT_01922 0.64 +0.8
40,933 + H281DRAFT_01922 0.64 +0.3
40,933 + H281DRAFT_01922 0.64 +0.1
40,933 + H281DRAFT_01922 0.64 -1.7
40,933 + H281DRAFT_01922 0.64 -0.4
40,933 + H281DRAFT_01922 0.64 +0.3
40,937 + H281DRAFT_01922 0.64 -1.2
40,937 + H281DRAFT_01922 0.64 -0.3
40,937 + H281DRAFT_01922 0.64 -0.0
40,937 + H281DRAFT_01922 0.64 +0.0
40,938 - H281DRAFT_01922 0.64 -0.6
40,938 - H281DRAFT_01922 0.64 -0.2
40,938 - H281DRAFT_01922 0.64 -0.9
40,938 - H281DRAFT_01922 0.64 +0.5
40,938 - H281DRAFT_01922 0.64 -1.1

Or see this region's nucleotide sequence