Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01546 and H281DRAFT_01547 are separated by 100 nucleotides H281DRAFT_01547 and H281DRAFT_01548 are separated by 135 nucleotides H281DRAFT_01548 and H281DRAFT_01549 are separated by 92 nucleotides
H281DRAFT_01546: H281DRAFT_01546 - putative spermidine/putrescine transport system ATP-binding protein, at 418,700 to 419,776
_01546
H281DRAFT_01547: H281DRAFT_01547 - DNA-binding transcriptional regulator, LysR family, at 419,877 to 420,848
_01547
H281DRAFT_01548: H281DRAFT_01548 - hypothetical protein, at 420,984 to 421,310
_01548
H281DRAFT_01549: H281DRAFT_01549 - MFS transporter, DHA2 family, multidrug resistance protein, at 421,403 to 422,962
_01549
Position (kb) 419
420
421 Strain fitness (log2 ratio) -1
0
1 at 419.062 kb on + strand, within H281DRAFT_01546 at 419.063 kb on - strand, within H281DRAFT_01546 at 419.098 kb on - strand, within H281DRAFT_01546 at 419.196 kb on + strand, within H281DRAFT_01546 at 419.511 kb on + strand, within H281DRAFT_01546 at 419.512 kb on - strand, within H281DRAFT_01546 at 419.714 kb on + strand at 419.815 kb on + strand at 419.816 kb on - strand at 419.817 kb on + strand at 419.817 kb on + strand at 419.818 kb on - strand at 419.887 kb on + strand at 419.976 kb on + strand, within H281DRAFT_01547 at 419.977 kb on - strand, within H281DRAFT_01547 at 420.093 kb on + strand, within H281DRAFT_01547 at 420.125 kb on - strand, within H281DRAFT_01547 at 420.857 kb on - strand at 420.857 kb on - strand at 421.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 419,062 + H281DRAFT_01546 0.34 +1.0 419,063 - H281DRAFT_01546 0.34 +0.4 419,098 - H281DRAFT_01546 0.37 +0.2 419,196 + H281DRAFT_01546 0.46 +0.1 419,511 + H281DRAFT_01546 0.75 -0.5 419,512 - H281DRAFT_01546 0.75 +0.5 419,714 + -0.0 419,815 + +0.1 419,816 - -1.4 419,817 + +0.2 419,817 + +0.0 419,818 - +0.8 419,887 + -0.1 419,976 + H281DRAFT_01547 0.10 +0.7 419,977 - H281DRAFT_01547 0.10 +0.4 420,093 + H281DRAFT_01547 0.22 +0.6 420,125 - H281DRAFT_01547 0.26 +0.7 420,857 - -0.7 420,857 - -0.6 421,326 - +0.3
Or see this region's nucleotide sequence