Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01273

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01272 and H281DRAFT_01273 are separated by 147 nucleotidesH281DRAFT_01273 and H281DRAFT_01274 are separated by 10 nucleotides H281DRAFT_01272: H281DRAFT_01272 - hypothetical protein, at 106,483 to 107,670 _01272 H281DRAFT_01273: H281DRAFT_01273 - feruloyl esterase, at 107,818 to 109,524 _01273 H281DRAFT_01274: H281DRAFT_01274 - Outer membrane protein (porin), at 109,535 to 110,677 _01274 Position (kb) 107 108 109 110Strain fitness (log2 ratio) -2 -1 0 1 2at 106.931 kb on - strand, within H281DRAFT_01272at 107.134 kb on + strand, within H281DRAFT_01272at 107.293 kb on + strand, within H281DRAFT_01272at 107.520 kb on - strand, within H281DRAFT_01272at 107.648 kb on - strandat 107.813 kb on - strandat 108.189 kb on - strand, within H281DRAFT_01273at 109.005 kb on - strand, within H281DRAFT_01273at 109.239 kb on - strand, within H281DRAFT_01273at 109.665 kb on + strand, within H281DRAFT_01274at 109.692 kb on + strand, within H281DRAFT_01274at 109.792 kb on - strand, within H281DRAFT_01274at 109.905 kb on + strand, within H281DRAFT_01274at 110.203 kb on - strand, within H281DRAFT_01274at 110.239 kb on - strand, within H281DRAFT_01274at 110.304 kb on + strand, within H281DRAFT_01274

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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106,931 - H281DRAFT_01272 0.38 -0.1
107,134 + H281DRAFT_01272 0.55 +0.4
107,293 + H281DRAFT_01272 0.68 -2.7
107,520 - H281DRAFT_01272 0.87 +1.1
107,648 - -0.5
107,813 - -0.0
108,189 - H281DRAFT_01273 0.22 +0.6
109,005 - H281DRAFT_01273 0.70 +0.4
109,239 - H281DRAFT_01273 0.83 +0.7
109,665 + H281DRAFT_01274 0.11 +0.9
109,692 + H281DRAFT_01274 0.14 -0.6
109,792 - H281DRAFT_01274 0.22 +1.9
109,905 + H281DRAFT_01274 0.32 +0.1
110,203 - H281DRAFT_01274 0.58 +0.3
110,239 - H281DRAFT_01274 0.62 +0.0
110,304 + H281DRAFT_01274 0.67 +0.4

Or see this region's nucleotide sequence