Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01120

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01119 and H281DRAFT_01120 overlap by 4 nucleotidesH281DRAFT_01120 and H281DRAFT_01121 are separated by 119 nucleotides H281DRAFT_01119: H281DRAFT_01119 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 1,260,996 to 1,262,627 _01119 H281DRAFT_01120: H281DRAFT_01120 - monosaccharide ABC transporter membrane protein, CUT2 family, at 1,262,624 to 1,263,625 _01120 H281DRAFT_01121: H281DRAFT_01121 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 1,263,745 to 1,264,920 _01121 Position (kb) 1262 1263 1264Strain fitness (log2 ratio) -1 0 1at 1261.853 kb on + strand, within H281DRAFT_01119at 1261.853 kb on + strand, within H281DRAFT_01119at 1262.391 kb on + strand, within H281DRAFT_01119at 1262.461 kb on + strand, within H281DRAFT_01119at 1262.739 kb on - strand, within H281DRAFT_01120at 1263.240 kb on - strand, within H281DRAFT_01120at 1263.240 kb on - strand, within H281DRAFT_01120at 1263.703 kb on - strandat 1263.724 kb on + strandat 1263.725 kb on - strandat 1263.725 kb on - strandat 1264.225 kb on + strand, within H281DRAFT_01121at 1264.226 kb on - strand, within H281DRAFT_01121at 1264.304 kb on - strand, within H281DRAFT_01121at 1264.417 kb on + strand, within H281DRAFT_01121

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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1,261,853 + H281DRAFT_01119 0.53 -0.8
1,261,853 + H281DRAFT_01119 0.53 +0.6
1,262,391 + H281DRAFT_01119 0.85 -0.6
1,262,461 + H281DRAFT_01119 0.90 +0.5
1,262,739 - H281DRAFT_01120 0.11 +0.4
1,263,240 - H281DRAFT_01120 0.61 +1.7
1,263,240 - H281DRAFT_01120 0.61 +0.3
1,263,703 - -0.0
1,263,724 + +0.7
1,263,725 - -0.1
1,263,725 - +0.8
1,264,225 + H281DRAFT_01121 0.41 +0.8
1,264,226 - H281DRAFT_01121 0.41 -0.2
1,264,304 - H281DRAFT_01121 0.48 -0.3
1,264,417 + H281DRAFT_01121 0.57 +0.4

Or see this region's nucleotide sequence