Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01049

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01048 and H281DRAFT_01049 are separated by 239 nucleotidesH281DRAFT_01049 and H281DRAFT_01050 are separated by 106 nucleotides H281DRAFT_01048: H281DRAFT_01048 - transcriptional regulator, GntR family, at 1,177,605 to 1,179,086 _01048 H281DRAFT_01049: H281DRAFT_01049 - Nucleoside-diphosphate-sugar epimerase, at 1,179,326 to 1,180,396 _01049 H281DRAFT_01050: H281DRAFT_01050 - maleylacetate reductase, at 1,180,503 to 1,181,597 _01050 Position (kb) 1179 1180 1181Strain fitness (log2 ratio) -1 0 1at 1179.049 kb on + strandat 1179.050 kb on - strandat 1179.050 kb on - strandat 1179.080 kb on - strandat 1179.185 kb on + strandat 1179.185 kb on + strandat 1179.324 kb on + strandat 1179.431 kb on - strandat 1180.051 kb on - strand, within H281DRAFT_01049at 1180.379 kb on - strandat 1180.603 kb on + strandat 1181.045 kb on - strand, within H281DRAFT_01050at 1181.131 kb on + strand, within H281DRAFT_01050at 1181.200 kb on + strand, within H281DRAFT_01050

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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1,179,049 + +0.1
1,179,050 - +0.4
1,179,050 - +0.4
1,179,080 - +0.2
1,179,185 + -0.5
1,179,185 + +0.6
1,179,324 + -0.1
1,179,431 - +0.5
1,180,051 - H281DRAFT_01049 0.68 +0.6
1,180,379 - +0.9
1,180,603 + -0.0
1,181,045 - H281DRAFT_01050 0.49 +0.2
1,181,131 + H281DRAFT_01050 0.57 +0.4
1,181,200 + H281DRAFT_01050 0.64 +0.3

Or see this region's nucleotide sequence