Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00950

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00949 and H281DRAFT_00950 are separated by 77 nucleotidesH281DRAFT_00950 and H281DRAFT_00951 are separated by 3 nucleotides H281DRAFT_00949: H281DRAFT_00949 - Glycosyltransferase, GT2 family, at 1,056,794 to 1,057,762 _00949 H281DRAFT_00950: H281DRAFT_00950 - Glycosyltransferase involved in cell wall bisynthesis, at 1,057,840 to 1,059,024 _00950 H281DRAFT_00951: H281DRAFT_00951 - O-antigen ligase like membrane protein, at 1,059,028 to 1,060,518 _00951 Position (kb) 1057 1058 1059 1060Strain fitness (log2 ratio) -1 0 1at 1056.843 kb on + strandat 1056.964 kb on + strand, within H281DRAFT_00949at 1056.964 kb on + strand, within H281DRAFT_00949at 1056.965 kb on - strand, within H281DRAFT_00949at 1057.080 kb on + strand, within H281DRAFT_00949at 1057.922 kb on - strandat 1057.986 kb on + strand, within H281DRAFT_00950at 1058.345 kb on - strand, within H281DRAFT_00950at 1058.485 kb on + strand, within H281DRAFT_00950at 1058.588 kb on - strand, within H281DRAFT_00950at 1059.083 kb on + strandat 1059.084 kb on - strandat 1059.223 kb on + strand, within H281DRAFT_00951at 1059.244 kb on + strand, within H281DRAFT_00951at 1059.244 kb on + strand, within H281DRAFT_00951at 1059.392 kb on - strand, within H281DRAFT_00951at 1059.395 kb on - strand, within H281DRAFT_00951at 1059.454 kb on + strand, within H281DRAFT_00951at 1059.461 kb on - strand, within H281DRAFT_00951

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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1,056,843 + +0.7
1,056,964 + H281DRAFT_00949 0.18 +0.4
1,056,964 + H281DRAFT_00949 0.18 -0.6
1,056,965 - H281DRAFT_00949 0.18 -0.6
1,057,080 + H281DRAFT_00949 0.30 -0.7
1,057,922 - -0.6
1,057,986 + H281DRAFT_00950 0.12 +0.4
1,058,345 - H281DRAFT_00950 0.43 +0.7
1,058,485 + H281DRAFT_00950 0.54 +0.2
1,058,588 - H281DRAFT_00950 0.63 +1.6
1,059,083 + +0.1
1,059,084 - -0.2
1,059,223 + H281DRAFT_00951 0.13 -0.4
1,059,244 + H281DRAFT_00951 0.14 +0.3
1,059,244 + H281DRAFT_00951 0.14 +0.3
1,059,392 - H281DRAFT_00951 0.24 +0.9
1,059,395 - H281DRAFT_00951 0.25 +0.2
1,059,454 + H281DRAFT_00951 0.29 -0.7
1,059,461 - H281DRAFT_00951 0.29 -0.2

Or see this region's nucleotide sequence