Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00870

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00868 and H281DRAFT_00869 are separated by 40 nucleotidesH281DRAFT_00869 and H281DRAFT_00870 overlap by 4 nucleotidesH281DRAFT_00870 and H281DRAFT_00871 are separated by 176 nucleotides H281DRAFT_00868: H281DRAFT_00868 - hypothetical protein, at 960,884 to 961,447 _00868 H281DRAFT_00869: H281DRAFT_00869 - putative ABC transport system permease protein, at 961,488 to 962,294 _00869 H281DRAFT_00870: H281DRAFT_00870 - putative ABC transport system ATP-binding protein, at 962,291 to 963,001 _00870 H281DRAFT_00871: H281DRAFT_00871 - hypothetical protein, at 963,178 to 965,727 _00871 Position (kb) 962 963 964Strain fitness (log2 ratio) -1 0 1at 961.561 kb on + strandat 961.884 kb on - strand, within H281DRAFT_00869at 961.884 kb on - strand, within H281DRAFT_00869at 962.029 kb on + strand, within H281DRAFT_00869at 962.140 kb on + strand, within H281DRAFT_00869at 962.140 kb on + strand, within H281DRAFT_00869at 962.141 kb on - strand, within H281DRAFT_00869at 962.908 kb on - strand, within H281DRAFT_00870at 963.307 kb on + strandat 963.308 kb on - strandat 963.308 kb on - strandat 963.372 kb on - strandat 963.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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961,561 + +0.0
961,884 - H281DRAFT_00869 0.49 -0.5
961,884 - H281DRAFT_00869 0.49 -0.7
962,029 + H281DRAFT_00869 0.67 -0.1
962,140 + H281DRAFT_00869 0.81 -0.0
962,140 + H281DRAFT_00869 0.81 +0.8
962,141 - H281DRAFT_00869 0.81 +0.7
962,908 - H281DRAFT_00870 0.87 +0.5
963,307 + -0.3
963,308 - -0.4
963,308 - +1.1
963,372 - +0.2
963,453 - -0.9

Or see this region's nucleotide sequence