Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00851

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00849 and H281DRAFT_00850 are separated by 518 nucleotidesH281DRAFT_00850 and H281DRAFT_00851 are separated by 49 nucleotidesH281DRAFT_00851 and H281DRAFT_00852 are separated by 125 nucleotides H281DRAFT_00849: H281DRAFT_00849 - conserved hypothetical protein, at 938,760 to 939,620 _00849 H281DRAFT_00850: H281DRAFT_00850 - hypothetical protein, at 940,139 to 940,306 _00850 H281DRAFT_00851: H281DRAFT_00851 - polyhydroxyalkanoate synthase, at 940,356 to 942,116 _00851 H281DRAFT_00852: H281DRAFT_00852 - acetyl-CoA acetyltransferase, at 942,242 to 943,423 _00852 Position (kb) 940 941 942 943Strain fitness (log2 ratio) -2 -1 0 1 2at 939.537 kb on + strandat 939.537 kb on + strandat 939.543 kb on + strandat 939.544 kb on - strandat 939.662 kb on + strandat 939.663 kb on - strandat 939.663 kb on - strandat 939.663 kb on - strandat 939.727 kb on + strandat 939.728 kb on - strandat 939.735 kb on + strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.736 kb on - strandat 939.764 kb on + strandat 939.765 kb on - strandat 939.839 kb on + strandat 939.840 kb on - strandat 939.840 kb on - strandat 939.849 kb on + strandat 939.850 kb on - strandat 939.925 kb on + strandat 939.925 kb on + strandat 939.939 kb on + strandat 940.030 kb on + strandat 940.127 kb on + strandat 940.128 kb on - strandat 940.502 kb on + strandat 940.502 kb on + strandat 940.502 kb on + strandat 940.503 kb on - strandat 940.503 kb on - strandat 940.554 kb on + strand, within H281DRAFT_00851at 940.555 kb on - strand, within H281DRAFT_00851at 940.692 kb on + strand, within H281DRAFT_00851at 940.693 kb on - strand, within H281DRAFT_00851at 941.016 kb on + strand, within H281DRAFT_00851at 941.017 kb on - strand, within H281DRAFT_00851at 941.017 kb on - strand, within H281DRAFT_00851at 941.039 kb on - strand, within H281DRAFT_00851at 941.039 kb on - strand, within H281DRAFT_00851at 941.082 kb on + strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.083 kb on - strand, within H281DRAFT_00851at 941.085 kb on + strand, within H281DRAFT_00851at 941.085 kb on + strand, within H281DRAFT_00851at 941.086 kb on - strand, within H281DRAFT_00851at 941.169 kb on - strand, within H281DRAFT_00851at 941.192 kb on + strand, within H281DRAFT_00851at 941.193 kb on - strand, within H281DRAFT_00851at 941.293 kb on + strand, within H281DRAFT_00851at 941.405 kb on - strand, within H281DRAFT_00851at 941.566 kb on - strand, within H281DRAFT_00851at 941.605 kb on - strand, within H281DRAFT_00851at 941.643 kb on + strand, within H281DRAFT_00851at 941.643 kb on + strand, within H281DRAFT_00851at 941.643 kb on + strand, within H281DRAFT_00851at 941.643 kb on + strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.644 kb on - strand, within H281DRAFT_00851at 941.663 kb on + strand, within H281DRAFT_00851at 941.663 kb on + strand, within H281DRAFT_00851at 941.663 kb on + strand, within H281DRAFT_00851at 941.664 kb on - strand, within H281DRAFT_00851at 941.668 kb on - strand, within H281DRAFT_00851at 941.668 kb on - strand, within H281DRAFT_00851at 941.668 kb on - strand, within H281DRAFT_00851at 941.705 kb on + strand, within H281DRAFT_00851at 941.706 kb on - strand, within H281DRAFT_00851at 941.758 kb on - strand, within H281DRAFT_00851at 941.758 kb on - strand, within H281DRAFT_00851at 941.758 kb on - strand, within H281DRAFT_00851at 941.758 kb on - strand, within H281DRAFT_00851at 941.778 kb on - strand, within H281DRAFT_00851at 941.778 kb on - strand, within H281DRAFT_00851at 941.799 kb on + strand, within H281DRAFT_00851at 942.696 kb on - strand, within H281DRAFT_00852at 942.696 kb on - strand, within H281DRAFT_00852at 942.696 kb on - strand, within H281DRAFT_00852at 942.696 kb on - strand, within H281DRAFT_00852at 942.705 kb on - strand, within H281DRAFT_00852at 943.076 kb on + strand, within H281DRAFT_00852

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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939,537 + -0.9
939,537 + +1.0
939,543 + +0.1
939,544 - -0.6
939,662 + +0.3
939,663 - +0.8
939,663 - +0.8
939,663 - +0.4
939,727 + -0.2
939,728 - -0.4
939,735 + +1.4
939,736 - -1.3
939,736 - +0.4
939,736 - +0.2
939,736 - -0.1
939,764 + +1.4
939,765 - -0.4
939,839 + +0.1
939,840 - -0.0
939,840 - +0.5
939,849 + -0.1
939,850 - +0.2
939,925 + +0.4
939,925 + +0.4
939,939 + +2.0
940,030 + +0.1
940,127 + +0.3
940,128 - +1.1
940,502 + +0.3
940,502 + +0.9
940,502 + +0.6
940,503 - +0.6
940,503 - +0.1
940,554 + H281DRAFT_00851 0.11 +0.7
940,555 - H281DRAFT_00851 0.11 +1.1
940,692 + H281DRAFT_00851 0.19 +1.0
940,693 - H281DRAFT_00851 0.19 +0.2
941,016 + H281DRAFT_00851 0.37 +2.0
941,017 - H281DRAFT_00851 0.38 +0.3
941,017 - H281DRAFT_00851 0.38 -0.5
941,039 - H281DRAFT_00851 0.39 -0.3
941,039 - H281DRAFT_00851 0.39 +0.3
941,082 + H281DRAFT_00851 0.41 +1.0
941,083 - H281DRAFT_00851 0.41 +0.3
941,083 - H281DRAFT_00851 0.41 +0.4
941,083 - H281DRAFT_00851 0.41 -0.5
941,083 - H281DRAFT_00851 0.41 +0.6
941,083 - H281DRAFT_00851 0.41 +0.6
941,085 + H281DRAFT_00851 0.41 +0.7
941,085 + H281DRAFT_00851 0.41 +1.5
941,086 - H281DRAFT_00851 0.41 -1.9
941,169 - H281DRAFT_00851 0.46 +0.9
941,192 + H281DRAFT_00851 0.47 +1.5
941,193 - H281DRAFT_00851 0.48 -0.1
941,293 + H281DRAFT_00851 0.53 +1.4
941,405 - H281DRAFT_00851 0.60 +0.2
941,566 - H281DRAFT_00851 0.69 +0.2
941,605 - H281DRAFT_00851 0.71 +0.5
941,643 + H281DRAFT_00851 0.73 +1.0
941,643 + H281DRAFT_00851 0.73 +0.5
941,643 + H281DRAFT_00851 0.73 +1.0
941,643 + H281DRAFT_00851 0.73 +1.0
941,644 - H281DRAFT_00851 0.73 +0.2
941,644 - H281DRAFT_00851 0.73 -0.8
941,644 - H281DRAFT_00851 0.73 +0.8
941,644 - H281DRAFT_00851 0.73 +0.3
941,644 - H281DRAFT_00851 0.73 +1.0
941,644 - H281DRAFT_00851 0.73 +0.3
941,644 - H281DRAFT_00851 0.73 +0.4
941,663 + H281DRAFT_00851 0.74 +1.4
941,663 + H281DRAFT_00851 0.74 +1.1
941,663 + H281DRAFT_00851 0.74 +0.8
941,664 - H281DRAFT_00851 0.74 +0.3
941,668 - H281DRAFT_00851 0.75 -0.1
941,668 - H281DRAFT_00851 0.75 +0.4
941,668 - H281DRAFT_00851 0.75 +0.7
941,705 + H281DRAFT_00851 0.77 +0.2
941,706 - H281DRAFT_00851 0.77 +0.1
941,758 - H281DRAFT_00851 0.80 +0.5
941,758 - H281DRAFT_00851 0.80 +0.2
941,758 - H281DRAFT_00851 0.80 +0.5
941,758 - H281DRAFT_00851 0.80 +0.2
941,778 - H281DRAFT_00851 0.81 +1.0
941,778 - H281DRAFT_00851 0.81 +0.5
941,799 + H281DRAFT_00851 0.82 +1.4
942,696 - H281DRAFT_00852 0.38 +0.4
942,696 - H281DRAFT_00852 0.38 +0.5
942,696 - H281DRAFT_00852 0.38 -0.4
942,696 - H281DRAFT_00852 0.38 +0.8
942,705 - H281DRAFT_00852 0.39 +0.5
943,076 + H281DRAFT_00852 0.71 +0.6

Or see this region's nucleotide sequence