Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00448

Experiment: Hydroxy-L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00447 and H281DRAFT_00448 are separated by 63 nucleotidesH281DRAFT_00448 and H281DRAFT_00449 are separated by 149 nucleotides H281DRAFT_00447: H281DRAFT_00447 - 40-residue YVTN family beta-propeller repeat-containing protein, at 497,112 to 498,131 _00447 H281DRAFT_00448: H281DRAFT_00448 - Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily, at 498,195 to 499,190 _00448 H281DRAFT_00449: H281DRAFT_00449 - Etoposide-induced protein 2.4 (EI24), at 499,340 to 500,173 _00449 Position (kb) 498 499 500Strain fitness (log2 ratio) -1 0 1 2at 497.276 kb on - strand, within H281DRAFT_00447at 497.288 kb on - strand, within H281DRAFT_00447at 497.423 kb on - strand, within H281DRAFT_00447at 497.471 kb on + strand, within H281DRAFT_00447at 497.501 kb on + strand, within H281DRAFT_00447at 497.505 kb on + strand, within H281DRAFT_00447at 497.505 kb on + strand, within H281DRAFT_00447at 497.505 kb on + strand, within H281DRAFT_00447at 497.505 kb on + strand, within H281DRAFT_00447at 497.505 kb on + strand, within H281DRAFT_00447at 497.505 kb on + strand, within H281DRAFT_00447at 497.506 kb on - strand, within H281DRAFT_00447at 497.506 kb on - strand, within H281DRAFT_00447at 497.506 kb on - strand, within H281DRAFT_00447at 497.506 kb on - strand, within H281DRAFT_00447at 497.506 kb on - strand, within H281DRAFT_00447at 497.506 kb on - strand, within H281DRAFT_00447at 497.511 kb on + strand, within H281DRAFT_00447at 497.511 kb on + strand, within H281DRAFT_00447at 497.512 kb on - strand, within H281DRAFT_00447at 497.512 kb on - strand, within H281DRAFT_00447at 497.728 kb on - strand, within H281DRAFT_00447at 497.728 kb on - strand, within H281DRAFT_00447at 497.757 kb on + strand, within H281DRAFT_00447at 497.757 kb on + strand, within H281DRAFT_00447at 497.758 kb on - strand, within H281DRAFT_00447at 497.780 kb on + strand, within H281DRAFT_00447at 497.780 kb on + strand, within H281DRAFT_00447at 497.983 kb on - strand, within H281DRAFT_00447at 498.088 kb on - strandat 498.088 kb on - strandat 498.088 kb on - strandat 498.088 kb on - strandat 498.096 kb on - strandat 498.255 kb on + strandat 498.255 kb on + strandat 498.256 kb on - strandat 498.256 kb on - strandat 498.256 kb on - strandat 498.304 kb on - strand, within H281DRAFT_00448at 498.318 kb on + strand, within H281DRAFT_00448at 498.319 kb on - strand, within H281DRAFT_00448at 498.319 kb on - strand, within H281DRAFT_00448at 498.451 kb on - strand, within H281DRAFT_00448at 498.451 kb on - strand, within H281DRAFT_00448at 498.618 kb on + strand, within H281DRAFT_00448at 498.619 kb on - strand, within H281DRAFT_00448at 498.619 kb on - strand, within H281DRAFT_00448at 498.619 kb on - strand, within H281DRAFT_00448at 498.619 kb on - strand, within H281DRAFT_00448at 498.947 kb on + strand, within H281DRAFT_00448at 498.971 kb on + strand, within H281DRAFT_00448at 498.972 kb on - strand, within H281DRAFT_00448at 498.976 kb on - strand, within H281DRAFT_00448at 498.976 kb on - strand, within H281DRAFT_00448at 499.062 kb on - strand, within H281DRAFT_00448at 499.090 kb on - strandat 499.626 kb on + strand, within H281DRAFT_00449at 499.761 kb on + strand, within H281DRAFT_00449at 499.761 kb on + strand, within H281DRAFT_00449at 499.761 kb on + strand, within H281DRAFT_00449at 499.762 kb on - strand, within H281DRAFT_00449at 499.762 kb on - strand, within H281DRAFT_00449at 499.762 kb on - strand, within H281DRAFT_00449at 499.869 kb on - strand, within H281DRAFT_00449at 499.869 kb on - strand, within H281DRAFT_00449at 500.020 kb on - strand, within H281DRAFT_00449at 500.054 kb on + strand, within H281DRAFT_00449at 500.054 kb on + strand, within H281DRAFT_00449at 500.054 kb on + strand, within H281DRAFT_00449at 500.055 kb on - strand, within H281DRAFT_00449at 500.055 kb on - strand, within H281DRAFT_00449at 500.055 kb on - strand, within H281DRAFT_00449at 500.094 kb on - strandat 500.096 kb on + strandat 500.097 kb on - strandat 500.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C)
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497,276 - H281DRAFT_00447 0.16 +0.2
497,288 - H281DRAFT_00447 0.17 +0.4
497,423 - H281DRAFT_00447 0.30 +1.0
497,471 + H281DRAFT_00447 0.35 +0.8
497,501 + H281DRAFT_00447 0.38 +0.8
497,505 + H281DRAFT_00447 0.39 +1.4
497,505 + H281DRAFT_00447 0.39 +2.3
497,505 + H281DRAFT_00447 0.39 +0.8
497,505 + H281DRAFT_00447 0.39 +1.6
497,505 + H281DRAFT_00447 0.39 +0.9
497,505 + H281DRAFT_00447 0.39 +0.4
497,506 - H281DRAFT_00447 0.39 +2.3
497,506 - H281DRAFT_00447 0.39 +1.4
497,506 - H281DRAFT_00447 0.39 +0.8
497,506 - H281DRAFT_00447 0.39 +0.6
497,506 - H281DRAFT_00447 0.39 +0.8
497,506 - H281DRAFT_00447 0.39 +0.9
497,511 + H281DRAFT_00447 0.39 +0.6
497,511 + H281DRAFT_00447 0.39 +0.6
497,512 - H281DRAFT_00447 0.39 +1.3
497,512 - H281DRAFT_00447 0.39 +0.1
497,728 - H281DRAFT_00447 0.60 +0.8
497,728 - H281DRAFT_00447 0.60 -0.6
497,757 + H281DRAFT_00447 0.63 +0.6
497,757 + H281DRAFT_00447 0.63 +1.3
497,758 - H281DRAFT_00447 0.63 +0.6
497,780 + H281DRAFT_00447 0.65 +1.7
497,780 + H281DRAFT_00447 0.65 +1.7
497,983 - H281DRAFT_00447 0.85 +0.7
498,088 - +0.8
498,088 - +0.3
498,088 - +0.6
498,088 - +0.2
498,096 - +0.8
498,255 + +0.8
498,255 + +0.9
498,256 - +0.8
498,256 - +0.7
498,256 - +0.5
498,304 - H281DRAFT_00448 0.11 +1.0
498,318 + H281DRAFT_00448 0.12 +1.0
498,319 - H281DRAFT_00448 0.12 +0.9
498,319 - H281DRAFT_00448 0.12 +0.5
498,451 - H281DRAFT_00448 0.26 +0.9
498,451 - H281DRAFT_00448 0.26 +0.5
498,618 + H281DRAFT_00448 0.42 +1.0
498,619 - H281DRAFT_00448 0.43 +1.8
498,619 - H281DRAFT_00448 0.43 +1.0
498,619 - H281DRAFT_00448 0.43 +1.0
498,619 - H281DRAFT_00448 0.43 +0.8
498,947 + H281DRAFT_00448 0.76 +0.8
498,971 + H281DRAFT_00448 0.78 +1.3
498,972 - H281DRAFT_00448 0.78 +0.5
498,976 - H281DRAFT_00448 0.78 +0.4
498,976 - H281DRAFT_00448 0.78 +0.4
499,062 - H281DRAFT_00448 0.87 +1.3
499,090 - +0.3
499,626 + H281DRAFT_00449 0.34 +0.1
499,761 + H281DRAFT_00449 0.50 +0.1
499,761 + H281DRAFT_00449 0.50 +0.8
499,761 + H281DRAFT_00449 0.50 -0.4
499,762 - H281DRAFT_00449 0.51 +0.3
499,762 - H281DRAFT_00449 0.51 -0.5
499,762 - H281DRAFT_00449 0.51 +0.4
499,869 - H281DRAFT_00449 0.63 +0.7
499,869 - H281DRAFT_00449 0.63 +0.0
500,020 - H281DRAFT_00449 0.82 +0.1
500,054 + H281DRAFT_00449 0.86 +0.7
500,054 + H281DRAFT_00449 0.86 +0.9
500,054 + H281DRAFT_00449 0.86 +0.6
500,055 - H281DRAFT_00449 0.86 +1.0
500,055 - H281DRAFT_00449 0.86 +0.1
500,055 - H281DRAFT_00449 0.86 -0.1
500,094 - -0.2
500,096 + -0.2
500,097 - -0.2
500,188 - +0.1

Or see this region's nucleotide sequence