Experiment: Hydroxy-L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00446 and H281DRAFT_00447 are separated by 574 nucleotides H281DRAFT_00447 and H281DRAFT_00448 are separated by 63 nucleotides
H281DRAFT_00446: H281DRAFT_00446 - Autotransporter adhesin, at 493,667 to 496,537
_00446
H281DRAFT_00447: H281DRAFT_00447 - 40-residue YVTN family beta-propeller repeat-containing protein, at 497,112 to 498,131
_00447
H281DRAFT_00448: H281DRAFT_00448 - Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily, at 498,195 to 499,190
_00448
Position (kb) 497
498
499 Strain fitness (log2 ratio) -1
0
1
2 at 496.322 kb on - strand at 496.668 kb on + strand at 496.861 kb on + strand at 496.862 kb on - strand at 496.862 kb on - strand at 496.884 kb on - strand at 496.930 kb on + strand at 497.079 kb on + strand at 497.079 kb on + strand at 497.079 kb on + strand at 497.080 kb on - strand at 497.080 kb on - strand at 497.080 kb on - strand at 497.276 kb on - strand, within H281DRAFT_00447 at 497.288 kb on - strand, within H281DRAFT_00447 at 497.423 kb on - strand, within H281DRAFT_00447 at 497.471 kb on + strand, within H281DRAFT_00447 at 497.501 kb on + strand, within H281DRAFT_00447 at 497.505 kb on + strand, within H281DRAFT_00447 at 497.505 kb on + strand, within H281DRAFT_00447 at 497.505 kb on + strand, within H281DRAFT_00447 at 497.505 kb on + strand, within H281DRAFT_00447 at 497.505 kb on + strand, within H281DRAFT_00447 at 497.505 kb on + strand, within H281DRAFT_00447 at 497.506 kb on - strand, within H281DRAFT_00447 at 497.506 kb on - strand, within H281DRAFT_00447 at 497.506 kb on - strand, within H281DRAFT_00447 at 497.506 kb on - strand, within H281DRAFT_00447 at 497.506 kb on - strand, within H281DRAFT_00447 at 497.506 kb on - strand, within H281DRAFT_00447 at 497.511 kb on + strand, within H281DRAFT_00447 at 497.511 kb on + strand, within H281DRAFT_00447 at 497.512 kb on - strand, within H281DRAFT_00447 at 497.512 kb on - strand, within H281DRAFT_00447 at 497.728 kb on - strand, within H281DRAFT_00447 at 497.728 kb on - strand, within H281DRAFT_00447 at 497.757 kb on + strand, within H281DRAFT_00447 at 497.757 kb on + strand, within H281DRAFT_00447 at 497.758 kb on - strand, within H281DRAFT_00447 at 497.780 kb on + strand, within H281DRAFT_00447 at 497.780 kb on + strand, within H281DRAFT_00447 at 497.983 kb on - strand, within H281DRAFT_00447 at 498.088 kb on - strand at 498.088 kb on - strand at 498.088 kb on - strand at 498.088 kb on - strand at 498.096 kb on - strand at 498.255 kb on + strand at 498.255 kb on + strand at 498.256 kb on - strand at 498.256 kb on - strand at 498.256 kb on - strand at 498.304 kb on - strand, within H281DRAFT_00448 at 498.318 kb on + strand, within H281DRAFT_00448 at 498.319 kb on - strand, within H281DRAFT_00448 at 498.319 kb on - strand, within H281DRAFT_00448 at 498.451 kb on - strand, within H281DRAFT_00448 at 498.451 kb on - strand, within H281DRAFT_00448 at 498.618 kb on + strand, within H281DRAFT_00448 at 498.619 kb on - strand, within H281DRAFT_00448 at 498.619 kb on - strand, within H281DRAFT_00448 at 498.619 kb on - strand, within H281DRAFT_00448 at 498.619 kb on - strand, within H281DRAFT_00448 at 498.947 kb on + strand, within H281DRAFT_00448 at 498.971 kb on + strand, within H281DRAFT_00448 at 498.972 kb on - strand, within H281DRAFT_00448 at 498.976 kb on - strand, within H281DRAFT_00448 at 498.976 kb on - strand, within H281DRAFT_00448 at 499.062 kb on - strand, within H281DRAFT_00448 at 499.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydroxy-L-Proline (C) remove 496,322 - -0.2 496,668 + -0.0 496,861 + +0.0 496,862 - +0.3 496,862 - +0.4 496,884 - +0.6 496,930 + -0.8 497,079 + -0.1 497,079 + -0.4 497,079 + -0.4 497,080 - +1.8 497,080 - +0.2 497,080 - +1.0 497,276 - H281DRAFT_00447 0.16 +0.2 497,288 - H281DRAFT_00447 0.17 +0.4 497,423 - H281DRAFT_00447 0.30 +1.0 497,471 + H281DRAFT_00447 0.35 +0.8 497,501 + H281DRAFT_00447 0.38 +0.8 497,505 + H281DRAFT_00447 0.39 +1.4 497,505 + H281DRAFT_00447 0.39 +2.3 497,505 + H281DRAFT_00447 0.39 +0.8 497,505 + H281DRAFT_00447 0.39 +1.6 497,505 + H281DRAFT_00447 0.39 +0.9 497,505 + H281DRAFT_00447 0.39 +0.4 497,506 - H281DRAFT_00447 0.39 +2.3 497,506 - H281DRAFT_00447 0.39 +1.4 497,506 - H281DRAFT_00447 0.39 +0.8 497,506 - H281DRAFT_00447 0.39 +0.6 497,506 - H281DRAFT_00447 0.39 +0.8 497,506 - H281DRAFT_00447 0.39 +0.9 497,511 + H281DRAFT_00447 0.39 +0.6 497,511 + H281DRAFT_00447 0.39 +0.6 497,512 - H281DRAFT_00447 0.39 +1.3 497,512 - H281DRAFT_00447 0.39 +0.1 497,728 - H281DRAFT_00447 0.60 +0.8 497,728 - H281DRAFT_00447 0.60 -0.6 497,757 + H281DRAFT_00447 0.63 +0.6 497,757 + H281DRAFT_00447 0.63 +1.3 497,758 - H281DRAFT_00447 0.63 +0.6 497,780 + H281DRAFT_00447 0.65 +1.7 497,780 + H281DRAFT_00447 0.65 +1.7 497,983 - H281DRAFT_00447 0.85 +0.7 498,088 - +0.8 498,088 - +0.3 498,088 - +0.6 498,088 - +0.2 498,096 - +0.8 498,255 + +0.8 498,255 + +0.9 498,256 - +0.8 498,256 - +0.7 498,256 - +0.5 498,304 - H281DRAFT_00448 0.11 +1.0 498,318 + H281DRAFT_00448 0.12 +1.0 498,319 - H281DRAFT_00448 0.12 +0.9 498,319 - H281DRAFT_00448 0.12 +0.5 498,451 - H281DRAFT_00448 0.26 +0.9 498,451 - H281DRAFT_00448 0.26 +0.5 498,618 + H281DRAFT_00448 0.42 +1.0 498,619 - H281DRAFT_00448 0.43 +1.8 498,619 - H281DRAFT_00448 0.43 +1.0 498,619 - H281DRAFT_00448 0.43 +1.0 498,619 - H281DRAFT_00448 0.43 +0.8 498,947 + H281DRAFT_00448 0.76 +0.8 498,971 + H281DRAFT_00448 0.78 +1.3 498,972 - H281DRAFT_00448 0.78 +0.5 498,976 - H281DRAFT_00448 0.78 +0.4 498,976 - H281DRAFT_00448 0.78 +0.4 499,062 - H281DRAFT_00448 0.87 +1.3 499,090 - +0.3
Or see this region's nucleotide sequence