Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_969 and HP15_970 overlap by 75 nucleotides HP15_970 and HP15_971 are separated by 64 nucleotides HP15_971 and HP15_972 are separated by 191 nucleotides HP15_972 and HP15_973 are separated by 204 nucleotides HP15_973 and HP15_974 are separated by 99 nucleotides
HP15_969: HP15_969 - hypothetical protein, at 982,513 to 983,028
_969
HP15_970: HP15_970 - hypothetical protein, at 982,954 to 983,067
_970
HP15_971: HP15_971 - NIPSNAP family containing protein, at 983,132 to 983,437
_971
HP15_972: HP15_972 - hypothetical protein, at 983,629 to 984,114
_972
HP15_973: HP15_973 - conserved hypothetical protein, at 984,319 to 984,501
_973
HP15_974: HP15_974 - hypothetical protein, at 984,601 to 984,933
_974
Position (kb) 983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2 at 982.739 kb on - strand, within HP15_969 at 982.761 kb on + strand, within HP15_969 at 982.815 kb on + strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.830 kb on + strand, within HP15_969 at 982.915 kb on + strand, within HP15_969 at 982.915 kb on + strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.923 kb on - strand, within HP15_969 at 982.937 kb on - strand, within HP15_969 at 982.937 kb on - strand, within HP15_969 at 983.033 kb on + strand, within HP15_970 at 983.035 kb on + strand, within HP15_970 at 983.048 kb on - strand, within HP15_970 at 983.134 kb on - strand at 983.165 kb on - strand, within HP15_971 at 983.175 kb on - strand, within HP15_971 at 983.200 kb on + strand, within HP15_971 at 983.208 kb on - strand, within HP15_971 at 983.223 kb on - strand, within HP15_971 at 983.224 kb on - strand, within HP15_971 at 983.326 kb on - strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.393 kb on + strand, within HP15_971 at 983.400 kb on + strand, within HP15_971 at 983.403 kb on - strand, within HP15_971 at 983.472 kb on - strand at 983.491 kb on + strand at 983.504 kb on + strand at 983.530 kb on - strand at 983.657 kb on - strand at 983.709 kb on - strand, within HP15_972 at 983.721 kb on - strand, within HP15_972 at 983.871 kb on + strand, within HP15_972 at 984.040 kb on + strand, within HP15_972 at 984.047 kb on + strand, within HP15_972 at 984.239 kb on - strand at 984.295 kb on + strand at 984.295 kb on - strand at 984.481 kb on - strand, within HP15_973 at 984.481 kb on - strand, within HP15_973 at 984.517 kb on + strand at 984.532 kb on - strand at 984.651 kb on - strand, within HP15_974 at 984.734 kb on + strand, within HP15_974 at 984.787 kb on + strand, within HP15_974 at 984.952 kb on + strand at 984.990 kb on + strand at 985.055 kb on + strand at 985.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 982,739 - HP15_969 0.44 +0.1 982,761 + HP15_969 0.48 +0.7 982,815 + HP15_969 0.59 -0.1 982,823 - HP15_969 0.60 -0.2 982,823 - HP15_969 0.60 +0.6 982,823 - HP15_969 0.60 -0.0 982,823 - HP15_969 0.60 -0.0 982,830 + HP15_969 0.61 +1.2 982,915 + HP15_969 0.78 -0.6 982,915 + HP15_969 0.78 +0.1 982,923 - HP15_969 0.79 -0.0 982,923 - HP15_969 0.79 -0.8 982,923 - HP15_969 0.79 -0.4 982,937 - HP15_969 0.82 +1.0 982,937 - HP15_969 0.82 -0.4 983,033 + HP15_970 0.69 -0.4 983,035 + HP15_970 0.71 +0.9 983,048 - HP15_970 0.82 +0.6 983,134 - -0.5 983,165 - HP15_971 0.11 +1.3 983,175 - HP15_971 0.14 -1.8 983,200 + HP15_971 0.22 +0.3 983,208 - HP15_971 0.25 +0.5 983,223 - HP15_971 0.30 +1.3 983,224 - HP15_971 0.30 +0.9 983,326 - HP15_971 0.63 +1.8 983,393 + HP15_971 0.85 +0.5 983,393 + HP15_971 0.85 -0.1 983,393 + HP15_971 0.85 -0.2 983,393 + HP15_971 0.85 -0.2 983,400 + HP15_971 0.88 -0.5 983,403 - HP15_971 0.89 +0.2 983,472 - +0.7 983,491 + +1.4 983,504 + -1.2 983,530 - -0.3 983,657 - +0.7 983,709 - HP15_972 0.16 +0.5 983,721 - HP15_972 0.19 +1.6 983,871 + HP15_972 0.50 +1.3 984,040 + HP15_972 0.85 +1.5 984,047 + HP15_972 0.86 -1.2 984,239 - -1.0 984,295 + +0.1 984,295 - +0.0 984,481 - HP15_973 0.89 +0.6 984,481 - HP15_973 0.89 +0.3 984,517 + -0.2 984,532 - +0.4 984,651 - HP15_974 0.15 -1.2 984,734 + HP15_974 0.40 +0.4 984,787 + HP15_974 0.56 +1.3 984,952 + +0.5 984,990 + -0.6 985,055 + -0.1 985,063 - -1.2
Or see this region's nucleotide sequence