Strain Fitness in Marinobacter adhaerens HP15 around HP15_859

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_858 and HP15_859 overlap by 8 nucleotidesHP15_859 and HP15_860 are separated by 157 nucleotidesHP15_860 and HP15_861 are separated by 68 nucleotides HP15_858: HP15_858 - phenylalanine aminotransferase (EC 2.6.1.57) (from data), at 875,180 to 876,367 _858 HP15_859: HP15_859 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) (from data), at 876,360 to 879,878 _859 HP15_860: HP15_860 - transcriptional regulator, AsnC family protein, at 880,036 to 880,515 _860 HP15_861: HP15_861 - cold shock, CspA, at 880,584 to 880,814 _861 Position (kb) 876 877 878 879 880Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 875.418 kb on + strand, within HP15_858at 875.499 kb on + strand, within HP15_858at 875.543 kb on - strand, within HP15_858at 875.588 kb on - strand, within HP15_858at 875.620 kb on + strand, within HP15_858at 875.689 kb on - strand, within HP15_858at 875.694 kb on - strand, within HP15_858at 875.744 kb on + strand, within HP15_858at 875.866 kb on + strand, within HP15_858at 875.886 kb on + strand, within HP15_858at 875.952 kb on - strand, within HP15_858at 875.964 kb on + strand, within HP15_858at 875.984 kb on - strand, within HP15_858at 876.012 kb on + strand, within HP15_858at 876.012 kb on + strand, within HP15_858at 876.166 kb on + strand, within HP15_858at 876.214 kb on - strand, within HP15_858at 876.347 kb on + strandat 876.355 kb on - strandat 876.427 kb on + strandat 876.479 kb on + strandat 876.609 kb on - strandat 876.737 kb on - strand, within HP15_859at 876.774 kb on + strand, within HP15_859at 876.782 kb on - strand, within HP15_859at 876.801 kb on - strand, within HP15_859at 876.954 kb on - strand, within HP15_859at 876.982 kb on + strand, within HP15_859at 876.992 kb on + strand, within HP15_859at 877.005 kb on + strand, within HP15_859at 877.024 kb on + strand, within HP15_859at 877.054 kb on + strand, within HP15_859at 877.075 kb on + strand, within HP15_859at 877.128 kb on - strand, within HP15_859at 877.353 kb on - strand, within HP15_859at 877.407 kb on - strand, within HP15_859at 877.463 kb on - strand, within HP15_859at 877.494 kb on + strand, within HP15_859at 877.580 kb on - strand, within HP15_859at 877.619 kb on - strand, within HP15_859at 877.634 kb on + strand, within HP15_859at 877.709 kb on + strand, within HP15_859at 877.709 kb on + strand, within HP15_859at 877.760 kb on + strand, within HP15_859at 877.824 kb on - strand, within HP15_859at 877.900 kb on + strand, within HP15_859at 877.936 kb on + strand, within HP15_859at 878.058 kb on - strand, within HP15_859at 878.072 kb on + strand, within HP15_859at 878.256 kb on + strand, within HP15_859at 878.432 kb on + strand, within HP15_859at 878.481 kb on + strand, within HP15_859at 878.489 kb on - strand, within HP15_859at 878.637 kb on + strand, within HP15_859at 878.751 kb on + strand, within HP15_859at 878.814 kb on - strand, within HP15_859at 878.814 kb on - strand, within HP15_859at 878.867 kb on + strand, within HP15_859at 878.886 kb on + strand, within HP15_859at 878.911 kb on + strand, within HP15_859at 878.981 kb on + strand, within HP15_859at 878.989 kb on - strand, within HP15_859at 879.060 kb on + strand, within HP15_859at 879.355 kb on - strand, within HP15_859at 879.482 kb on + strand, within HP15_859at 879.700 kb on + strandat 879.703 kb on - strandat 879.712 kb on + strandat 879.720 kb on - strandat 879.732 kb on + strandat 879.750 kb on + strandat 879.750 kb on + strandat 879.842 kb on - strandat 880.172 kb on - strand, within HP15_860at 880.177 kb on - strand, within HP15_860at 880.177 kb on - strand, within HP15_860at 880.202 kb on + strand, within HP15_860at 880.208 kb on - strand, within HP15_860at 880.300 kb on - strand, within HP15_860at 880.334 kb on + strand, within HP15_860at 880.335 kb on - strand, within HP15_860at 880.370 kb on + strand, within HP15_860at 880.370 kb on + strand, within HP15_860at 880.370 kb on + strand, within HP15_860at 880.378 kb on - strand, within HP15_860at 880.378 kb on - strand, within HP15_860at 880.378 kb on - strand, within HP15_860at 880.394 kb on + strand, within HP15_860at 880.620 kb on - strand, within HP15_861at 880.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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875,418 + HP15_858 0.20 -4.2
875,499 + HP15_858 0.27 -3.0
875,543 - HP15_858 0.31 -2.0
875,588 - HP15_858 0.34 -3.7
875,620 + HP15_858 0.37 -3.4
875,689 - HP15_858 0.43 -2.7
875,694 - HP15_858 0.43 -2.8
875,744 + HP15_858 0.47 +0.8
875,866 + HP15_858 0.58 -3.7
875,886 + HP15_858 0.59 -2.2
875,952 - HP15_858 0.65 -3.3
875,964 + HP15_858 0.66 -2.8
875,984 - HP15_858 0.68 -3.4
876,012 + HP15_858 0.70 -1.8
876,012 + HP15_858 0.70 -2.4
876,166 + HP15_858 0.83 -4.6
876,214 - HP15_858 0.87 -2.8
876,347 + -2.4
876,355 - -0.2
876,427 + -3.0
876,479 + -0.2
876,609 - -1.8
876,737 - HP15_859 0.11 -3.0
876,774 + HP15_859 0.12 -3.7
876,782 - HP15_859 0.12 -3.9
876,801 - HP15_859 0.13 -1.2
876,954 - HP15_859 0.17 -5.4
876,982 + HP15_859 0.18 -4.2
876,992 + HP15_859 0.18 -0.2
877,005 + HP15_859 0.18 -3.5
877,024 + HP15_859 0.19 -1.2
877,054 + HP15_859 0.20 -4.2
877,075 + HP15_859 0.20 -2.8
877,128 - HP15_859 0.22 -4.4
877,353 - HP15_859 0.28 -5.1
877,407 - HP15_859 0.30 -1.2
877,463 - HP15_859 0.31 -3.9
877,494 + HP15_859 0.32 -3.7
877,580 - HP15_859 0.35 -5.8
877,619 - HP15_859 0.36 -3.5
877,634 + HP15_859 0.36 -5.5
877,709 + HP15_859 0.38 -4.3
877,709 + HP15_859 0.38 -3.0
877,760 + HP15_859 0.40 -4.7
877,824 - HP15_859 0.42 -2.8
877,900 + HP15_859 0.44 -2.5
877,936 + HP15_859 0.45 -1.2
878,058 - HP15_859 0.48 -3.0
878,072 + HP15_859 0.49 -3.8
878,256 + HP15_859 0.54 -3.2
878,432 + HP15_859 0.59 -2.2
878,481 + HP15_859 0.60 -1.2
878,489 - HP15_859 0.61 -5.1
878,637 + HP15_859 0.65 -5.0
878,751 + HP15_859 0.68 -1.2
878,814 - HP15_859 0.70 -2.3
878,814 - HP15_859 0.70 -5.9
878,867 + HP15_859 0.71 -4.5
878,886 + HP15_859 0.72 -2.2
878,911 + HP15_859 0.72 -3.9
878,981 + HP15_859 0.74 -3.2
878,989 - HP15_859 0.75 -1.2
879,060 + HP15_859 0.77 -3.5
879,355 - HP15_859 0.85 -2.4
879,482 + HP15_859 0.89 -5.1
879,700 + -4.4
879,703 - -1.2
879,712 + -2.2
879,720 - -3.5
879,732 + -3.0
879,750 + -2.5
879,750 + -2.2
879,842 - -2.8
880,172 - HP15_860 0.28 -6.1
880,177 - HP15_860 0.29 -4.3
880,177 - HP15_860 0.29 -1.8
880,202 + HP15_860 0.35 -2.2
880,208 - HP15_860 0.36 -4.7
880,300 - HP15_860 0.55 -4.9
880,334 + HP15_860 0.62 -6.0
880,335 - HP15_860 0.62 -4.9
880,370 + HP15_860 0.70 -1.8
880,370 + HP15_860 0.70 -4.3
880,370 + HP15_860 0.70 -5.7
880,378 - HP15_860 0.71 -4.7
880,378 - HP15_860 0.71 -3.7
880,378 - HP15_860 0.71 -4.9
880,394 + HP15_860 0.75 -1.2
880,620 - HP15_861 0.16 +1.0
880,848 + +1.4

Or see this region's nucleotide sequence