Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_857 and HP15_858 are separated by 56 nucleotides HP15_858 and HP15_859 overlap by 8 nucleotides
HP15_857: HP15_857 - sodium-dependent transporter family protein, at 873,741 to 875,123
_857
HP15_858: HP15_858 - phenylalanine aminotransferase (EC 2.6.1.57) <small>(from data)</small>, at 875,180 to 876,367
_858
HP15_859: HP15_859 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) <small>(from data)</small>, at 876,360 to 879,878
_859
Position (kb) 875
876
877 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 874.249 kb on - strand, within HP15_857 at 874.400 kb on + strand, within HP15_857 at 874.428 kb on + strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.436 kb on - strand, within HP15_857 at 874.523 kb on - strand, within HP15_857 at 874.887 kb on + strand, within HP15_857 at 874.895 kb on - strand, within HP15_857 at 875.057 kb on + strand at 875.065 kb on - strand at 875.065 kb on - strand at 875.065 kb on - strand at 875.066 kb on - strand at 875.077 kb on + strand at 875.105 kb on + strand at 875.303 kb on + strand, within HP15_858 at 875.418 kb on + strand, within HP15_858 at 875.499 kb on + strand, within HP15_858 at 875.543 kb on - strand, within HP15_858 at 875.588 kb on - strand, within HP15_858 at 875.620 kb on + strand, within HP15_858 at 875.689 kb on - strand, within HP15_858 at 875.694 kb on - strand, within HP15_858 at 875.744 kb on + strand, within HP15_858 at 875.866 kb on + strand, within HP15_858 at 875.886 kb on + strand, within HP15_858 at 875.952 kb on - strand, within HP15_858 at 875.964 kb on + strand, within HP15_858 at 875.984 kb on - strand, within HP15_858 at 876.012 kb on + strand, within HP15_858 at 876.012 kb on + strand, within HP15_858 at 876.166 kb on + strand, within HP15_858 at 876.214 kb on - strand, within HP15_858 at 876.347 kb on + strand at 876.355 kb on - strand at 876.427 kb on + strand at 876.479 kb on + strand at 876.609 kb on - strand at 876.737 kb on - strand, within HP15_859 at 876.774 kb on + strand, within HP15_859 at 876.782 kb on - strand, within HP15_859 at 876.801 kb on - strand, within HP15_859 at 876.954 kb on - strand, within HP15_859 at 876.982 kb on + strand, within HP15_859 at 876.992 kb on + strand, within HP15_859 at 877.005 kb on + strand, within HP15_859 at 877.024 kb on + strand, within HP15_859 at 877.054 kb on + strand, within HP15_859 at 877.075 kb on + strand, within HP15_859 at 877.128 kb on - strand, within HP15_859 at 877.353 kb on - strand, within HP15_859
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 874,249 - HP15_857 0.37 +1.9 874,400 + HP15_857 0.48 -0.3 874,428 + HP15_857 0.50 +0.2 874,436 - HP15_857 0.50 +1.2 874,436 - HP15_857 0.50 -0.7 874,436 - HP15_857 0.50 -1.1 874,523 - HP15_857 0.57 +0.6 874,887 + HP15_857 0.83 +0.2 874,895 - HP15_857 0.83 +0.4 875,057 + -0.2 875,065 - -0.3 875,065 - +0.8 875,065 - -1.1 875,066 - -0.1 875,077 + -0.2 875,105 + -0.3 875,303 + HP15_858 0.10 -2.7 875,418 + HP15_858 0.20 -4.2 875,499 + HP15_858 0.27 -3.0 875,543 - HP15_858 0.31 -2.0 875,588 - HP15_858 0.34 -3.7 875,620 + HP15_858 0.37 -3.4 875,689 - HP15_858 0.43 -2.7 875,694 - HP15_858 0.43 -2.8 875,744 + HP15_858 0.47 +0.8 875,866 + HP15_858 0.58 -3.7 875,886 + HP15_858 0.59 -2.2 875,952 - HP15_858 0.65 -3.3 875,964 + HP15_858 0.66 -2.8 875,984 - HP15_858 0.68 -3.4 876,012 + HP15_858 0.70 -1.8 876,012 + HP15_858 0.70 -2.4 876,166 + HP15_858 0.83 -4.6 876,214 - HP15_858 0.87 -2.8 876,347 + -2.4 876,355 - -0.2 876,427 + -3.0 876,479 + -0.2 876,609 - -1.8 876,737 - HP15_859 0.11 -3.0 876,774 + HP15_859 0.12 -3.7 876,782 - HP15_859 0.12 -3.9 876,801 - HP15_859 0.13 -1.2 876,954 - HP15_859 0.17 -5.4 876,982 + HP15_859 0.18 -4.2 876,992 + HP15_859 0.18 -0.2 877,005 + HP15_859 0.18 -3.5 877,024 + HP15_859 0.19 -1.2 877,054 + HP15_859 0.20 -4.2 877,075 + HP15_859 0.20 -2.8 877,128 - HP15_859 0.22 -4.4 877,353 - HP15_859 0.28 -5.1
Or see this region's nucleotide sequence