Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g135 and HP15_p187g136 are separated by 9 nucleotides HP15_p187g136 and HP15_p187g137 are separated by 455 nucleotides HP15_p187g137 and HP15_p187g139 are separated by 296 nucleotides HP15_p187g139 and HP15_p187g138 overlap by 12 nucleotides
HP15_p187g135: HP15_p187g135 - conserved hypothetical protein, at 138,838 to 139,626
_p187g135
HP15_p187g136: HP15_p187g136 - hypothetical protein, at 139,636 to 139,755
_p187g136
HP15_p187g137: HP15_p187g137 - outer membrane protein OprF, at 140,211 to 141,335
_p187g137
HP15_p187g139: HP15_p187g139 - hypothetical protein, at 141,632 to 141,796
_p187g139
HP15_p187g138: HP15_p187g138 - hypothetical protein, at 141,785 to 141,937
_p187g138
Position (kb)
140
141
142 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 139.213 kb on + strand, within HP15_p187g135 at 139.215 kb on + strand, within HP15_p187g135 at 139.252 kb on + strand, within HP15_p187g135 at 139.257 kb on + strand, within HP15_p187g135 at 139.260 kb on - strand, within HP15_p187g135 at 139.271 kb on + strand, within HP15_p187g135 at 139.271 kb on + strand, within HP15_p187g135 at 139.279 kb on - strand, within HP15_p187g135 at 139.281 kb on - strand, within HP15_p187g135 at 139.294 kb on + strand, within HP15_p187g135 at 139.294 kb on + strand, within HP15_p187g135 at 139.294 kb on + strand, within HP15_p187g135 at 139.294 kb on + strand, within HP15_p187g135 at 139.302 kb on - strand, within HP15_p187g135 at 139.302 kb on - strand, within HP15_p187g135 at 139.302 kb on - strand, within HP15_p187g135 at 139.302 kb on - strand, within HP15_p187g135 at 139.330 kb on - strand, within HP15_p187g135 at 139.426 kb on + strand, within HP15_p187g135 at 139.426 kb on + strand, within HP15_p187g135 at 139.434 kb on - strand, within HP15_p187g135 at 139.447 kb on + strand, within HP15_p187g135 at 139.447 kb on + strand, within HP15_p187g135 at 139.447 kb on + strand, within HP15_p187g135 at 139.447 kb on + strand, within HP15_p187g135 at 139.447 kb on + strand, within HP15_p187g135 at 139.447 kb on + strand, within HP15_p187g135 at 139.455 kb on - strand, within HP15_p187g135 at 139.455 kb on - strand, within HP15_p187g135 at 139.470 kb on + strand, within HP15_p187g135 at 139.476 kb on - strand, within HP15_p187g135 at 139.508 kb on + strand, within HP15_p187g135 at 139.529 kb on - strand, within HP15_p187g135 at 139.532 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.542 kb on + strand, within HP15_p187g135 at 139.550 kb on - strand at 139.550 kb on - strand at 139.550 kb on - strand at 139.550 kb on - strand at 139.550 kb on - strand at 139.550 kb on - strand at 139.550 kb on - strand at 139.552 kb on + strand at 139.553 kb on + strand at 139.553 kb on + strand at 139.566 kb on - strand at 139.587 kb on - strand at 139.587 kb on - strand at 139.587 kb on - strand at 139.621 kb on - strand at 139.642 kb on - strand at 139.667 kb on + strand, within HP15_p187g136 at 139.679 kb on + strand, within HP15_p187g136 at 139.742 kb on + strand, within HP15_p187g136 at 139.747 kb on + strand at 139.750 kb on - strand at 139.750 kb on - strand at 139.752 kb on - strand at 139.787 kb on + strand at 139.787 kb on + strand at 139.795 kb on - strand at 139.795 kb on - strand at 139.795 kb on - strand at 139.799 kb on + strand at 139.801 kb on - strand at 139.804 kb on + strand at 139.807 kb on - strand at 139.807 kb on - strand at 139.812 kb on - strand at 139.812 kb on - strand at 139.834 kb on + strand at 139.834 kb on + strand at 139.834 kb on + strand at 139.834 kb on + strand at 139.842 kb on - strand at 139.842 kb on - strand at 139.891 kb on + strand at 139.901 kb on - strand at 139.916 kb on - strand at 139.970 kb on - strand at 140.013 kb on - strand at 140.067 kb on - strand at 140.131 kb on - strand at 140.139 kb on - strand at 140.189 kb on + strand at 140.189 kb on + strand at 140.189 kb on + strand at 140.189 kb on + strand at 140.189 kb on + strand at 140.197 kb on - strand at 140.197 kb on - strand at 140.202 kb on - strand at 140.217 kb on - strand at 140.311 kb on + strand at 140.319 kb on - strand at 140.377 kb on - strand, within HP15_p187g137 at 140.499 kb on - strand, within HP15_p187g137 at 140.518 kb on - strand, within HP15_p187g137 at 140.560 kb on + strand, within HP15_p187g137 at 140.568 kb on - strand, within HP15_p187g137 at 140.568 kb on - strand, within HP15_p187g137 at 140.568 kb on - strand, within HP15_p187g137 at 140.568 kb on - strand, within HP15_p187g137 at 140.570 kb on + strand, within HP15_p187g137 at 140.578 kb on - strand, within HP15_p187g137 at 140.607 kb on + strand, within HP15_p187g137 at 140.622 kb on + strand, within HP15_p187g137 at 140.666 kb on + strand, within HP15_p187g137 at 140.666 kb on + strand, within HP15_p187g137 at 140.680 kb on + strand, within HP15_p187g137 at 140.684 kb on - strand, within HP15_p187g137 at 140.685 kb on + strand, within HP15_p187g137 at 140.686 kb on + strand, within HP15_p187g137 at 140.689 kb on - strand, within HP15_p187g137 at 140.694 kb on - strand, within HP15_p187g137 at 140.694 kb on - strand, within HP15_p187g137 at 140.703 kb on + strand, within HP15_p187g137 at 140.703 kb on + strand, within HP15_p187g137 at 140.703 kb on + strand, within HP15_p187g137 at 140.711 kb on - strand, within HP15_p187g137 at 140.711 kb on - strand, within HP15_p187g137 at 140.711 kb on - strand, within HP15_p187g137 at 140.720 kb on + strand, within HP15_p187g137 at 140.720 kb on + strand, within HP15_p187g137 at 140.728 kb on - strand, within HP15_p187g137 at 140.745 kb on + strand, within HP15_p187g137 at 140.745 kb on + strand, within HP15_p187g137 at 140.745 kb on + strand, within HP15_p187g137 at 140.769 kb on - strand, within HP15_p187g137 at 140.803 kb on + strand, within HP15_p187g137 at 140.803 kb on + strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.811 kb on - strand, within HP15_p187g137 at 140.891 kb on - strand, within HP15_p187g137 at 140.910 kb on - strand, within HP15_p187g137 at 140.911 kb on + strand, within HP15_p187g137 at 140.919 kb on - strand, within HP15_p187g137 at 140.923 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.936 kb on + strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.944 kb on - strand, within HP15_p187g137 at 140.957 kb on + strand, within HP15_p187g137 at 140.965 kb on - strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on + strand, within HP15_p187g137 at 140.989 kb on - strand, within HP15_p187g137 at 140.991 kb on + strand, within HP15_p187g137 at 140.997 kb on - strand, within HP15_p187g137 at 140.997 kb on - strand, within HP15_p187g137 at 141.018 kb on + strand, within HP15_p187g137 at 141.020 kb on - strand, within HP15_p187g137 at 141.048 kb on + strand, within HP15_p187g137 at 141.056 kb on - strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.130 kb on + strand, within HP15_p187g137 at 141.135 kb on + strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.138 kb on - strand, within HP15_p187g137 at 141.153 kb on - strand, within HP15_p187g137 at 141.252 kb on - strand at 141.258 kb on - strand at 141.259 kb on - strand at 141.411 kb on + strand at 141.416 kb on + strand at 141.416 kb on + strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.424 kb on - strand at 141.450 kb on - strand at 141.457 kb on - strand at 141.458 kb on - strand at 141.458 kb on - strand at 141.464 kb on - strand at 141.491 kb on - strand at 141.491 kb on - strand at 141.524 kb on - strand at 141.636 kb on - strand at 141.648 kb on + strand at 141.679 kb on + strand, within HP15_p187g139 at 141.692 kb on - strand, within HP15_p187g139 at 141.746 kb on + strand, within HP15_p187g139 at 141.769 kb on + strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.777 kb on - strand, within HP15_p187g139 at 141.795 kb on + strand at 141.829 kb on + strand, within HP15_p187g138 at 141.892 kb on - strand, within HP15_p187g138 at 141.941 kb on + strand at 141.949 kb on - strand at 141.949 kb on - strand at 142.020 kb on - strand at 142.039 kb on + strand at 142.067 kb on + strand at 142.067 kb on + strand at 142.067 kb on + strand at 142.075 kb on - strand at 142.110 kb on - strand at 142.132 kb on + strand at 142.133 kb on + strand at 142.140 kb on - strand at 142.141 kb on - strand at 142.191 kb on + strand at 142.227 kb on + strand at 142.257 kb on + strand at 142.259 kb on + strand at 142.266 kb on + strand at 142.275 kb on - strand at 142.298 kb on - strand at 142.303 kb on + strand at 142.308 kb on - strand at 142.311 kb on - strand at 142.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 139,213 + HP15_p187g135 0.48 -2.5 139,215 + HP15_p187g135 0.48 -0.4 139,252 + HP15_p187g135 0.52 -0.3 139,257 + HP15_p187g135 0.53 -0.1 139,260 - HP15_p187g135 0.53 -0.8 139,271 + HP15_p187g135 0.55 +0.5 139,271 + HP15_p187g135 0.55 -0.7 139,279 - HP15_p187g135 0.56 -0.3 139,281 - HP15_p187g135 0.56 -1.7 139,294 + HP15_p187g135 0.58 -0.7 139,294 + HP15_p187g135 0.58 -0.9 139,294 + HP15_p187g135 0.58 +0.2 139,294 + HP15_p187g135 0.58 +0.8 139,302 - HP15_p187g135 0.59 +1.0 139,302 - HP15_p187g135 0.59 +1.7 139,302 - HP15_p187g135 0.59 +1.2 139,302 - HP15_p187g135 0.59 -0.5 139,330 - HP15_p187g135 0.62 +0.8 139,426 + HP15_p187g135 0.75 +0.3 139,426 + HP15_p187g135 0.75 +0.3 139,434 - HP15_p187g135 0.76 -2.0 139,447 + HP15_p187g135 0.77 +1.1 139,447 + HP15_p187g135 0.77 +0.0 139,447 + HP15_p187g135 0.77 -0.1 139,447 + HP15_p187g135 0.77 -1.2 139,447 + HP15_p187g135 0.77 +1.9 139,447 + HP15_p187g135 0.77 +0.8 139,455 - HP15_p187g135 0.78 -0.3 139,455 - HP15_p187g135 0.78 +0.8 139,470 + HP15_p187g135 0.80 +0.3 139,476 - HP15_p187g135 0.81 +1.5 139,508 + HP15_p187g135 0.85 -0.5 139,529 - HP15_p187g135 0.88 -0.6 139,532 + HP15_p187g135 0.88 +0.9 139,542 + HP15_p187g135 0.89 +0.3 139,542 + HP15_p187g135 0.89 +0.2 139,542 + HP15_p187g135 0.89 +0.8 139,542 + HP15_p187g135 0.89 +1.7 139,542 + HP15_p187g135 0.89 -0.4 139,542 + HP15_p187g135 0.89 +0.6 139,542 + HP15_p187g135 0.89 -0.0 139,542 + HP15_p187g135 0.89 +0.5 139,542 + HP15_p187g135 0.89 +1.1 139,542 + HP15_p187g135 0.89 +0.0 139,550 - +1.5 139,550 - -2.0 139,550 - +1.3 139,550 - +0.8 139,550 - -0.2 139,550 - +0.3 139,550 - +2.1 139,552 + +1.9 139,553 + +0.1 139,553 + -0.7 139,566 - +1.5 139,587 - -0.3 139,587 - +0.2 139,587 - -1.7 139,621 - +0.3 139,642 - +1.4 139,667 + HP15_p187g136 0.26 +0.1 139,679 + HP15_p187g136 0.36 +0.3 139,742 + HP15_p187g136 0.88 -0.8 139,747 + +1.3 139,750 - +1.3 139,750 - -1.3 139,752 - -1.7 139,787 + +0.9 139,787 + -2.5 139,795 - +0.8 139,795 - -0.9 139,795 - +1.5 139,799 + -1.2 139,801 - -0.7 139,804 + +1.3 139,807 - +0.8 139,807 - -0.7 139,812 - -0.5 139,812 - +0.1 139,834 + -0.2 139,834 + -0.4 139,834 + -0.9 139,834 + -0.8 139,842 - +0.2 139,842 - -1.7 139,891 + +0.8 139,901 - +0.3 139,916 - +1.4 139,970 - +0.3 140,013 - -0.4 140,067 - +1.3 140,131 - +0.3 140,139 - +0.1 140,189 + -1.0 140,189 + +1.6 140,189 + +0.8 140,189 + -1.5 140,189 + +0.7 140,197 - -0.7 140,197 - +0.6 140,202 - -2.3 140,217 - -0.1 140,311 + +0.3 140,319 - +0.8 140,377 - HP15_p187g137 0.15 +1.9 140,499 - HP15_p187g137 0.26 +0.3 140,518 - HP15_p187g137 0.27 -0.5 140,560 + HP15_p187g137 0.31 -0.2 140,568 - HP15_p187g137 0.32 -0.3 140,568 - HP15_p187g137 0.32 -0.6 140,568 - HP15_p187g137 0.32 -0.2 140,568 - HP15_p187g137 0.32 +1.4 140,570 + HP15_p187g137 0.32 +0.8 140,578 - HP15_p187g137 0.33 +2.0 140,607 + HP15_p187g137 0.35 +0.0 140,622 + HP15_p187g137 0.37 -0.9 140,666 + HP15_p187g137 0.40 -0.7 140,666 + HP15_p187g137 0.40 +0.8 140,680 + HP15_p187g137 0.42 -1.5 140,684 - HP15_p187g137 0.42 -0.1 140,685 + HP15_p187g137 0.42 -0.5 140,686 + HP15_p187g137 0.42 -0.1 140,689 - HP15_p187g137 0.42 -0.7 140,694 - HP15_p187g137 0.43 -0.2 140,694 - HP15_p187g137 0.43 +0.3 140,703 + HP15_p187g137 0.44 +0.2 140,703 + HP15_p187g137 0.44 +1.6 140,703 + HP15_p187g137 0.44 -0.8 140,711 - HP15_p187g137 0.44 +0.2 140,711 - HP15_p187g137 0.44 +1.7 140,711 - HP15_p187g137 0.44 +0.3 140,720 + HP15_p187g137 0.45 -0.3 140,720 + HP15_p187g137 0.45 -0.1 140,728 - HP15_p187g137 0.46 +1.3 140,745 + HP15_p187g137 0.47 +0.3 140,745 + HP15_p187g137 0.47 -0.9 140,745 + HP15_p187g137 0.47 -0.2 140,769 - HP15_p187g137 0.50 -1.0 140,803 + HP15_p187g137 0.53 -1.2 140,803 + HP15_p187g137 0.53 +0.8 140,811 - HP15_p187g137 0.53 -0.2 140,811 - HP15_p187g137 0.53 +0.3 140,811 - HP15_p187g137 0.53 -0.4 140,891 - HP15_p187g137 0.60 +1.0 140,910 - HP15_p187g137 0.62 -0.9 140,911 + HP15_p187g137 0.62 -0.0 140,919 - HP15_p187g137 0.63 +1.7 140,923 + HP15_p187g137 0.63 -2.1 140,936 + HP15_p187g137 0.64 +0.3 140,936 + HP15_p187g137 0.64 -0.6 140,936 + HP15_p187g137 0.64 +1.1 140,944 - HP15_p187g137 0.65 -0.3 140,944 - HP15_p187g137 0.65 -1.5 140,944 - HP15_p187g137 0.65 +1.1 140,957 + HP15_p187g137 0.66 -1.4 140,965 - HP15_p187g137 0.67 -0.1 140,989 + HP15_p187g137 0.69 -0.8 140,989 + HP15_p187g137 0.69 -0.7 140,989 + HP15_p187g137 0.69 +1.3 140,989 - HP15_p187g137 0.69 -0.7 140,991 + HP15_p187g137 0.69 -2.5 140,997 - HP15_p187g137 0.70 +2.3 140,997 - HP15_p187g137 0.70 -1.2 141,018 + HP15_p187g137 0.72 -0.3 141,020 - HP15_p187g137 0.72 -0.7 141,048 + HP15_p187g137 0.74 +0.9 141,056 - HP15_p187g137 0.75 +0.3 141,130 + HP15_p187g137 0.82 +0.3 141,130 + HP15_p187g137 0.82 +2.3 141,130 + HP15_p187g137 0.82 +1.2 141,135 + HP15_p187g137 0.82 -0.1 141,138 - HP15_p187g137 0.82 -0.2 141,138 - HP15_p187g137 0.82 +1.1 141,138 - HP15_p187g137 0.82 -1.2 141,138 - HP15_p187g137 0.82 +0.8 141,138 - HP15_p187g137 0.82 +0.6 141,153 - HP15_p187g137 0.84 -0.4 141,252 - -0.2 141,258 - -1.1 141,259 - -0.6 141,411 + +0.1 141,416 + +0.9 141,416 + -0.7 141,424 - -1.5 141,424 - -1.7 141,424 - -2.7 141,424 - -0.4 141,450 - +0.3 141,457 - +2.6 141,458 - +1.7 141,458 - -1.7 141,464 - +2.0 141,491 - +1.8 141,491 - +0.3 141,524 - -0.2 141,636 - -0.2 141,648 + +0.0 141,679 + HP15_p187g139 0.28 +1.3 141,692 - HP15_p187g139 0.36 +0.8 141,746 + HP15_p187g139 0.69 +0.3 141,769 + HP15_p187g139 0.83 -0.5 141,777 - HP15_p187g139 0.88 +0.3 141,777 - HP15_p187g139 0.88 +0.3 141,777 - HP15_p187g139 0.88 -0.3 141,795 + +1.6 141,829 + HP15_p187g138 0.29 -0.1 141,892 - HP15_p187g138 0.70 -0.5 141,941 + +0.3 141,949 - +2.2 141,949 - -0.4 142,020 - +0.3 142,039 + -0.6 142,067 + +0.8 142,067 + +1.6 142,067 + +0.2 142,075 - +0.3 142,110 - +1.9 142,132 + -0.3 142,133 + +0.4 142,140 - +1.7 142,141 - +2.2 142,191 + +1.0 142,227 + -0.2 142,257 + -0.1 142,259 + +0.3 142,266 + +1.1 142,275 - +0.7 142,298 - +0.3 142,303 + -1.0 142,308 - -1.2 142,311 - +0.3 142,320 - +2.1
Or see this region's nucleotide sequence