Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g61

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g60 and HP15_p187g61 are separated by 49 nucleotidesHP15_p187g61 and HP15_p187g62 are separated by 70 nucleotides HP15_p187g60: HP15_p187g60 - asparagine synthase, glutamine-hydrolyzing, at 53,811 to 55,784 _p187g60 HP15_p187g61: HP15_p187g61 - conserved hypothetical protein, membrane, at 55,834 to 56,874 _p187g61 HP15_p187g62: HP15_p187g62 - acetyltransferase, at 56,945 to 57,928 _p187g62 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3at 54.855 kb on + strand, within HP15_p187g60at 54.906 kb on - strand, within HP15_p187g60at 54.934 kb on + strand, within HP15_p187g60at 54.938 kb on + strand, within HP15_p187g60at 54.982 kb on + strand, within HP15_p187g60at 55.048 kb on + strand, within HP15_p187g60at 55.054 kb on + strand, within HP15_p187g60at 55.056 kb on - strand, within HP15_p187g60at 55.086 kb on - strand, within HP15_p187g60at 55.100 kb on - strand, within HP15_p187g60at 55.116 kb on + strand, within HP15_p187g60at 55.116 kb on + strand, within HP15_p187g60at 55.116 kb on + strand, within HP15_p187g60at 55.124 kb on - strand, within HP15_p187g60at 55.234 kb on + strand, within HP15_p187g60at 55.242 kb on - strand, within HP15_p187g60at 55.252 kb on + strand, within HP15_p187g60at 55.260 kb on - strand, within HP15_p187g60at 55.284 kb on + strand, within HP15_p187g60at 55.342 kb on + strand, within HP15_p187g60at 55.370 kb on + strand, within HP15_p187g60at 55.370 kb on + strand, within HP15_p187g60at 55.384 kb on + strand, within HP15_p187g60at 55.402 kb on + strand, within HP15_p187g60at 55.402 kb on + strand, within HP15_p187g60at 55.402 kb on + strand, within HP15_p187g60at 55.404 kb on + strand, within HP15_p187g60at 55.410 kb on - strandat 55.410 kb on - strand, within HP15_p187g60at 55.439 kb on + strand, within HP15_p187g60at 55.439 kb on + strand, within HP15_p187g60at 55.439 kb on + strand, within HP15_p187g60at 55.447 kb on - strand, within HP15_p187g60at 55.447 kb on - strand, within HP15_p187g60at 55.457 kb on - strand, within HP15_p187g60at 55.466 kb on + strand, within HP15_p187g60at 55.474 kb on - strand, within HP15_p187g60at 55.474 kb on - strand, within HP15_p187g60at 55.558 kb on - strand, within HP15_p187g60at 55.671 kb on - strandat 55.724 kb on + strandat 55.729 kb on + strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.732 kb on - strandat 55.750 kb on - strandat 55.879 kb on - strandat 55.952 kb on + strand, within HP15_p187g61at 55.952 kb on + strand, within HP15_p187g61at 55.960 kb on - strand, within HP15_p187g61at 55.993 kb on - strand, within HP15_p187g61at 56.061 kb on - strand, within HP15_p187g61at 56.154 kb on - strand, within HP15_p187g61at 56.176 kb on + strand, within HP15_p187g61at 56.184 kb on - strand, within HP15_p187g61at 56.186 kb on - strand, within HP15_p187g61at 56.193 kb on + strand, within HP15_p187g61at 56.226 kb on + strand, within HP15_p187g61at 56.235 kb on - strand, within HP15_p187g61at 56.240 kb on - strand, within HP15_p187g61at 56.240 kb on - strand, within HP15_p187g61at 56.241 kb on - strand, within HP15_p187g61at 56.241 kb on - strand, within HP15_p187g61at 56.241 kb on - strand, within HP15_p187g61at 56.254 kb on + strand, within HP15_p187g61at 56.254 kb on + strand, within HP15_p187g61at 56.262 kb on - strand, within HP15_p187g61at 56.262 kb on - strand, within HP15_p187g61at 56.262 kb on - strand, within HP15_p187g61at 56.283 kb on - strand, within HP15_p187g61at 56.364 kb on - strand, within HP15_p187g61at 56.382 kb on + strand, within HP15_p187g61at 56.397 kb on - strand, within HP15_p187g61at 56.420 kb on - strand, within HP15_p187g61at 56.475 kb on + strand, within HP15_p187g61at 56.475 kb on + strand, within HP15_p187g61at 56.483 kb on - strand, within HP15_p187g61at 56.483 kb on - strand, within HP15_p187g61at 56.519 kb on + strand, within HP15_p187g61at 56.562 kb on - strand, within HP15_p187g61at 56.579 kb on + strand, within HP15_p187g61at 56.579 kb on + strand, within HP15_p187g61at 56.587 kb on - strand, within HP15_p187g61at 56.661 kb on + strand, within HP15_p187g61at 56.686 kb on + strand, within HP15_p187g61at 56.686 kb on + strand, within HP15_p187g61at 56.766 kb on + strand, within HP15_p187g61at 56.769 kb on - strand, within HP15_p187g61at 56.789 kb on + strandat 56.799 kb on + strandat 56.809 kb on + strandat 56.867 kb on + strandat 56.922 kb on - strandat 56.948 kb on + strandat 56.948 kb on + strandat 56.948 kb on + strandat 56.956 kb on - strandat 56.956 kb on - strandat 56.971 kb on - strandat 56.998 kb on - strandat 57.079 kb on - strand, within HP15_p187g62at 57.162 kb on + strand, within HP15_p187g62at 57.167 kb on + strand, within HP15_p187g62at 57.237 kb on + strand, within HP15_p187g62at 57.245 kb on - strand, within HP15_p187g62at 57.245 kb on - strand, within HP15_p187g62at 57.245 kb on - strand, within HP15_p187g62at 57.245 kb on - strand, within HP15_p187g62at 57.247 kb on + strand, within HP15_p187g62at 57.250 kb on + strand, within HP15_p187g62at 57.255 kb on - strand, within HP15_p187g62at 57.262 kb on + strand, within HP15_p187g62at 57.262 kb on + strand, within HP15_p187g62at 57.270 kb on - strand, within HP15_p187g62at 57.270 kb on - strand, within HP15_p187g62at 57.272 kb on - strand, within HP15_p187g62at 57.279 kb on - strand, within HP15_p187g62at 57.279 kb on - strand, within HP15_p187g62at 57.279 kb on - strand, within HP15_p187g62at 57.280 kb on + strand, within HP15_p187g62at 57.361 kb on + strand, within HP15_p187g62at 57.402 kb on + strand, within HP15_p187g62at 57.402 kb on + strand, within HP15_p187g62at 57.402 kb on + strand, within HP15_p187g62at 57.410 kb on - strand, within HP15_p187g62at 57.424 kb on - strand, within HP15_p187g62at 57.446 kb on - strand, within HP15_p187g62at 57.468 kb on - strand, within HP15_p187g62at 57.489 kb on + strand, within HP15_p187g62at 57.551 kb on + strand, within HP15_p187g62at 57.583 kb on + strand, within HP15_p187g62at 57.583 kb on + strand, within HP15_p187g62at 57.583 kb on + strand, within HP15_p187g62at 57.583 kb on + strand, within HP15_p187g62at 57.591 kb on - strand, within HP15_p187g62at 57.591 kb on - strand, within HP15_p187g62at 57.593 kb on + strand, within HP15_p187g62at 57.596 kb on - strand, within HP15_p187g62at 57.601 kb on - strand, within HP15_p187g62at 57.607 kb on - strand, within HP15_p187g62at 57.641 kb on - strand, within HP15_p187g62at 57.673 kb on - strand, within HP15_p187g62at 57.683 kb on + strand, within HP15_p187g62at 57.683 kb on + strand, within HP15_p187g62at 57.693 kb on + strand, within HP15_p187g62at 57.711 kb on + strand, within HP15_p187g62at 57.711 kb on + strand, within HP15_p187g62at 57.719 kb on - strand, within HP15_p187g62at 57.719 kb on - strand, within HP15_p187g62at 57.729 kb on - strand, within HP15_p187g62at 57.739 kb on - strand, within HP15_p187g62at 57.748 kb on - strand, within HP15_p187g62

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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54,855 + HP15_p187g60 0.53 -0.4
54,906 - HP15_p187g60 0.55 +1.1
54,934 + HP15_p187g60 0.57 +0.6
54,938 + HP15_p187g60 0.57 +0.6
54,982 + HP15_p187g60 0.59 -0.1
55,048 + HP15_p187g60 0.63 -0.1
55,054 + HP15_p187g60 0.63 +1.1
55,056 - HP15_p187g60 0.63 -0.2
55,086 - HP15_p187g60 0.65 +0.6
55,100 - HP15_p187g60 0.65 +1.1
55,116 + HP15_p187g60 0.66 +0.3
55,116 + HP15_p187g60 0.66 +1.2
55,116 + HP15_p187g60 0.66 +0.0
55,124 - HP15_p187g60 0.67 -0.0
55,234 + HP15_p187g60 0.72 +0.9
55,242 - HP15_p187g60 0.72 +1.9
55,252 + HP15_p187g60 0.73 +0.6
55,260 - HP15_p187g60 0.73 +0.5
55,284 + HP15_p187g60 0.75 -0.5
55,342 + HP15_p187g60 0.78 +0.3
55,370 + HP15_p187g60 0.79 +0.3
55,370 + HP15_p187g60 0.79 +0.2
55,384 + HP15_p187g60 0.80 +0.1
55,402 + HP15_p187g60 0.81 -0.7
55,402 + HP15_p187g60 0.81 -0.8
55,402 + HP15_p187g60 0.81 +0.3
55,404 + HP15_p187g60 0.81 -0.2
55,410 - +0.3
55,410 - HP15_p187g60 0.81 -0.5
55,439 + HP15_p187g60 0.82 +1.8
55,439 + HP15_p187g60 0.82 +0.6
55,439 + HP15_p187g60 0.82 -0.2
55,447 - HP15_p187g60 0.83 +1.8
55,447 - HP15_p187g60 0.83 +0.8
55,457 - HP15_p187g60 0.83 +0.0
55,466 + HP15_p187g60 0.84 -1.1
55,474 - HP15_p187g60 0.84 +0.3
55,474 - HP15_p187g60 0.84 +0.3
55,558 - HP15_p187g60 0.89 -0.4
55,671 - -0.1
55,724 + +1.3
55,729 + -0.1
55,732 - -0.2
55,732 - +1.4
55,732 - -1.0
55,732 - +0.3
55,732 - +2.0
55,732 - +0.3
55,750 - +2.3
55,879 - +1.0
55,952 + HP15_p187g61 0.11 +1.7
55,952 + HP15_p187g61 0.11 +0.8
55,960 - HP15_p187g61 0.12 +1.1
55,993 - HP15_p187g61 0.15 -0.7
56,061 - HP15_p187g61 0.22 -0.2
56,154 - HP15_p187g61 0.31 -1.1
56,176 + HP15_p187g61 0.33 -0.4
56,184 - HP15_p187g61 0.34 +0.5
56,186 - HP15_p187g61 0.34 +1.0
56,193 + HP15_p187g61 0.34 +0.0
56,226 + HP15_p187g61 0.38 +0.2
56,235 - HP15_p187g61 0.39 +1.0
56,240 - HP15_p187g61 0.39 +0.1
56,240 - HP15_p187g61 0.39 +1.7
56,241 - HP15_p187g61 0.39 -0.2
56,241 - HP15_p187g61 0.39 -0.8
56,241 - HP15_p187g61 0.39 +1.9
56,254 + HP15_p187g61 0.40 -0.4
56,254 + HP15_p187g61 0.40 -0.2
56,262 - HP15_p187g61 0.41 +1.1
56,262 - HP15_p187g61 0.41 +0.3
56,262 - HP15_p187g61 0.41 -1.2
56,283 - HP15_p187g61 0.43 -1.2
56,364 - HP15_p187g61 0.51 -0.2
56,382 + HP15_p187g61 0.53 +0.3
56,397 - HP15_p187g61 0.54 +1.3
56,420 - HP15_p187g61 0.56 +0.7
56,475 + HP15_p187g61 0.62 +1.7
56,475 + HP15_p187g61 0.62 -1.1
56,483 - HP15_p187g61 0.62 +0.5
56,483 - HP15_p187g61 0.62 -1.7
56,519 + HP15_p187g61 0.66 -0.2
56,562 - HP15_p187g61 0.70 -0.5
56,579 + HP15_p187g61 0.72 +0.3
56,579 + HP15_p187g61 0.72 +1.6
56,587 - HP15_p187g61 0.72 +2.4
56,661 + HP15_p187g61 0.79 +1.5
56,686 + HP15_p187g61 0.82 -0.1
56,686 + HP15_p187g61 0.82 +1.2
56,766 + HP15_p187g61 0.90 +0.3
56,769 - HP15_p187g61 0.90 +1.8
56,789 + +0.8
56,799 + +1.6
56,809 + +0.2
56,867 + +0.8
56,922 - -0.5
56,948 + +0.5
56,948 + -0.5
56,948 + -1.5
56,956 - -0.1
56,956 - +1.0
56,971 - +0.3
56,998 - +1.7
57,079 - HP15_p187g62 0.14 -0.6
57,162 + HP15_p187g62 0.22 -1.0
57,167 + HP15_p187g62 0.23 +1.3
57,237 + HP15_p187g62 0.30 +0.2
57,245 - HP15_p187g62 0.30 +1.3
57,245 - HP15_p187g62 0.30 -0.4
57,245 - HP15_p187g62 0.30 +0.0
57,245 - HP15_p187g62 0.30 -0.1
57,247 + HP15_p187g62 0.31 +1.1
57,250 + HP15_p187g62 0.31 +1.1
57,255 - HP15_p187g62 0.32 +1.1
57,262 + HP15_p187g62 0.32 +1.6
57,262 + HP15_p187g62 0.32 +0.0
57,270 - HP15_p187g62 0.33 +1.5
57,270 - HP15_p187g62 0.33 -0.1
57,272 - HP15_p187g62 0.33 -0.4
57,279 - HP15_p187g62 0.34 -0.9
57,279 - HP15_p187g62 0.34 +0.1
57,279 - HP15_p187g62 0.34 -0.5
57,280 + HP15_p187g62 0.34 +0.9
57,361 + HP15_p187g62 0.42 -0.6
57,402 + HP15_p187g62 0.46 -1.0
57,402 + HP15_p187g62 0.46 +0.7
57,402 + HP15_p187g62 0.46 -0.2
57,410 - HP15_p187g62 0.47 -1.9
57,424 - HP15_p187g62 0.49 -0.2
57,446 - HP15_p187g62 0.51 +0.4
57,468 - HP15_p187g62 0.53 +1.3
57,489 + HP15_p187g62 0.55 -0.7
57,551 + HP15_p187g62 0.62 -0.1
57,583 + HP15_p187g62 0.65 +1.3
57,583 + HP15_p187g62 0.65 -0.4
57,583 + HP15_p187g62 0.65 -0.1
57,583 + HP15_p187g62 0.65 +1.1
57,591 - HP15_p187g62 0.66 -0.0
57,591 - HP15_p187g62 0.66 +0.3
57,593 + HP15_p187g62 0.66 -0.8
57,596 - HP15_p187g62 0.66 -1.7
57,601 - HP15_p187g62 0.67 +2.9
57,607 - HP15_p187g62 0.67 +2.1
57,641 - HP15_p187g62 0.71 +0.9
57,673 - HP15_p187g62 0.74 +1.4
57,683 + HP15_p187g62 0.75 -0.6
57,683 + HP15_p187g62 0.75 -0.3
57,693 + HP15_p187g62 0.76 +0.7
57,711 + HP15_p187g62 0.78 -0.6
57,711 + HP15_p187g62 0.78 -0.3
57,719 - HP15_p187g62 0.79 -0.7
57,719 - HP15_p187g62 0.79 +0.8
57,729 - HP15_p187g62 0.80 +0.8
57,739 - HP15_p187g62 0.81 -0.2
57,748 - HP15_p187g62 0.82 +1.0

Or see this region's nucleotide sequence