Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g28 and HP15_p187g29 are separated by 34 nucleotides HP15_p187g29 and HP15_p187g30 are separated by 125 nucleotides HP15_p187g30 and HP15_p187g31 are separated by 214 nucleotides HP15_p187g31 and HP15_p187g32 are separated by 343 nucleotides
HP15_p187g28: HP15_p187g28 - hypothetical protein, at 21,792 to 21,929
_p187g28
HP15_p187g29: HP15_p187g29 - hypothetical protein, at 21,964 to 22,341
_p187g29
HP15_p187g30: HP15_p187g30 - conserved hypothetical protein, membrane, at 22,467 to 22,688
_p187g30
HP15_p187g31: HP15_p187g31 - protein containing nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase domain, at 22,903 to 24,063
_p187g31
HP15_p187g32: HP15_p187g32 - helix-turn-helix- domain containing protein AraC-type, at 24,407 to 25,261
_p187g32
Position (kb)
22
23
24
25 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 21.928 kb on + strand at 21.928 kb on + strand at 21.999 kb on + strand at 21.999 kb on + strand at 22.007 kb on - strand, within HP15_p187g29 at 22.007 kb on - strand, within HP15_p187g29 at 22.021 kb on - strand, within HP15_p187g29 at 22.021 kb on - strand, within HP15_p187g29 at 22.057 kb on - strand, within HP15_p187g29 at 22.120 kb on + strand, within HP15_p187g29 at 22.223 kb on + strand, within HP15_p187g29 at 22.223 kb on + strand, within HP15_p187g29 at 22.225 kb on + strand, within HP15_p187g29 at 22.231 kb on - strand, within HP15_p187g29 at 22.260 kb on + strand, within HP15_p187g29 at 22.260 kb on + strand, within HP15_p187g29 at 22.260 kb on + strand, within HP15_p187g29 at 22.268 kb on - strand, within HP15_p187g29 at 22.268 kb on - strand, within HP15_p187g29 at 22.268 kb on - strand, within HP15_p187g29 at 22.313 kb on + strand at 22.313 kb on + strand at 22.313 kb on + strand at 22.321 kb on - strand at 22.321 kb on - strand at 22.321 kb on - strand at 22.321 kb on - strand at 22.321 kb on - strand at 22.326 kb on - strand at 22.331 kb on - strand at 22.413 kb on - strand at 22.413 kb on - strand at 22.478 kb on - strand at 22.483 kb on + strand at 22.525 kb on - strand, within HP15_p187g30 at 22.525 kb on - strand, within HP15_p187g30 at 22.617 kb on + strand, within HP15_p187g30 at 22.617 kb on + strand, within HP15_p187g30 at 22.632 kb on + strand, within HP15_p187g30 at 22.632 kb on + strand, within HP15_p187g30 at 22.632 kb on + strand, within HP15_p187g30 at 22.640 kb on - strand, within HP15_p187g30 at 22.651 kb on + strand, within HP15_p187g30 at 22.659 kb on - strand, within HP15_p187g30 at 22.735 kb on - strand at 22.737 kb on + strand at 22.737 kb on + strand at 22.744 kb on + strand at 22.744 kb on + strand at 22.744 kb on + strand at 22.749 kb on + strand at 22.749 kb on + strand at 22.749 kb on + strand at 22.749 kb on + strand at 22.749 kb on + strand at 22.749 kb on + strand at 22.749 kb on + strand at 22.749 kb on + strand at 22.749 kb on + strand at 22.757 kb on - strand at 22.757 kb on - strand at 22.757 kb on - strand at 22.757 kb on - strand at 22.757 kb on - strand at 22.757 kb on - strand at 22.880 kb on - strand at 22.886 kb on + strand at 22.894 kb on - strand at 22.894 kb on - strand at 22.904 kb on - strand at 22.986 kb on + strand at 23.013 kb on - strand at 23.036 kb on - strand at 23.051 kb on + strand, within HP15_p187g31 at 23.080 kb on + strand, within HP15_p187g31 at 23.149 kb on + strand, within HP15_p187g31 at 23.150 kb on + strand, within HP15_p187g31 at 23.157 kb on - strand, within HP15_p187g31 at 23.157 kb on - strand, within HP15_p187g31 at 23.157 kb on - strand, within HP15_p187g31 at 23.157 kb on - strand, within HP15_p187g31 at 23.167 kb on + strand, within HP15_p187g31 at 23.204 kb on + strand, within HP15_p187g31 at 23.204 kb on + strand, within HP15_p187g31 at 23.212 kb on - strand, within HP15_p187g31 at 23.217 kb on - strand, within HP15_p187g31 at 23.233 kb on - strand, within HP15_p187g31 at 23.297 kb on - strand, within HP15_p187g31 at 23.298 kb on - strand, within HP15_p187g31 at 23.329 kb on + strand, within HP15_p187g31 at 23.339 kb on - strand, within HP15_p187g31 at 23.377 kb on + strand, within HP15_p187g31 at 23.382 kb on + strand, within HP15_p187g31 at 23.390 kb on - strand, within HP15_p187g31 at 23.395 kb on + strand, within HP15_p187g31 at 23.395 kb on + strand, within HP15_p187g31 at 23.395 kb on + strand, within HP15_p187g31 at 23.395 kb on - strand, within HP15_p187g31 at 23.403 kb on - strand, within HP15_p187g31 at 23.405 kb on + strand, within HP15_p187g31 at 23.405 kb on + strand, within HP15_p187g31 at 23.407 kb on + strand, within HP15_p187g31 at 23.412 kb on + strand, within HP15_p187g31 at 23.413 kb on - strand, within HP15_p187g31 at 23.413 kb on - strand, within HP15_p187g31 at 23.442 kb on - strand, within HP15_p187g31 at 23.511 kb on + strand, within HP15_p187g31 at 23.519 kb on - strand, within HP15_p187g31 at 23.528 kb on - strand, within HP15_p187g31 at 23.547 kb on + strand, within HP15_p187g31 at 23.547 kb on + strand, within HP15_p187g31 at 23.560 kb on + strand, within HP15_p187g31 at 23.612 kb on - strand, within HP15_p187g31 at 23.651 kb on + strand, within HP15_p187g31 at 23.723 kb on - strand, within HP15_p187g31 at 23.723 kb on - strand, within HP15_p187g31 at 23.744 kb on + strand, within HP15_p187g31 at 23.744 kb on + strand, within HP15_p187g31 at 23.744 kb on + strand, within HP15_p187g31 at 23.752 kb on - strand, within HP15_p187g31 at 23.752 kb on - strand, within HP15_p187g31 at 23.907 kb on + strand, within HP15_p187g31 at 23.929 kb on + strand, within HP15_p187g31 at 23.929 kb on + strand, within HP15_p187g31 at 23.937 kb on - strand, within HP15_p187g31 at 23.937 kb on - strand, within HP15_p187g31 at 24.044 kb on - strand at 24.063 kb on + strand at 24.071 kb on - strand at 24.176 kb on - strand at 24.184 kb on + strand at 24.184 kb on + strand at 24.184 kb on + strand at 24.184 kb on + strand at 24.184 kb on + strand at 24.184 kb on + strand at 24.184 kb on + strand at 24.184 kb on + strand at 24.184 kb on + strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.192 kb on - strand at 24.234 kb on + strand at 24.319 kb on - strand at 24.339 kb on + strand at 24.339 kb on + strand at 24.347 kb on - strand at 24.347 kb on - strand at 24.365 kb on + strand at 24.365 kb on + strand at 24.379 kb on - strand at 24.442 kb on - strand at 24.457 kb on + strand at 24.497 kb on - strand, within HP15_p187g32 at 24.593 kb on + strand, within HP15_p187g32 at 24.611 kb on + strand, within HP15_p187g32 at 24.656 kb on + strand, within HP15_p187g32 at 24.699 kb on + strand, within HP15_p187g32 at 24.785 kb on + strand, within HP15_p187g32 at 24.816 kb on - strand, within HP15_p187g32 at 24.816 kb on - strand, within HP15_p187g32 at 24.826 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.894 kb on + strand, within HP15_p187g32 at 24.902 kb on - strand, within HP15_p187g32 at 24.902 kb on - strand, within HP15_p187g32 at 24.946 kb on + strand, within HP15_p187g32 at 24.973 kb on + strand, within HP15_p187g32 at 24.981 kb on - strand, within HP15_p187g32 at 25.003 kb on - strand, within HP15_p187g32 at 25.010 kb on + strand, within HP15_p187g32 at 25.017 kb on + strand, within HP15_p187g32 at 25.020 kb on - strand, within HP15_p187g32 at 25.025 kb on - strand, within HP15_p187g32 at 25.032 kb on + strand, within HP15_p187g32
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 21,928 + +0.9 21,928 + -0.1 21,999 + +1.6 21,999 + -0.5 22,007 - HP15_p187g29 0.11 -0.3 22,007 - HP15_p187g29 0.11 +1.5 22,021 - HP15_p187g29 0.15 -0.7 22,021 - HP15_p187g29 0.15 +1.3 22,057 - HP15_p187g29 0.25 -0.4 22,120 + HP15_p187g29 0.41 +1.8 22,223 + HP15_p187g29 0.69 +1.4 22,223 + HP15_p187g29 0.69 +1.7 22,225 + HP15_p187g29 0.69 -1.1 22,231 - HP15_p187g29 0.71 +1.3 22,260 + HP15_p187g29 0.78 +1.7 22,260 + HP15_p187g29 0.78 +1.8 22,260 + HP15_p187g29 0.78 -0.6 22,268 - HP15_p187g29 0.80 +0.3 22,268 - HP15_p187g29 0.80 +0.3 22,268 - HP15_p187g29 0.80 +0.6 22,313 + +1.2 22,313 + -1.2 22,313 + +1.9 22,321 - -1.8 22,321 - +1.4 22,321 - +1.8 22,321 - -0.7 22,321 - -1.2 22,326 - -0.3 22,331 - -1.5 22,413 - +0.9 22,413 - +0.3 22,478 - -0.1 22,483 + -0.3 22,525 - HP15_p187g30 0.26 -0.5 22,525 - HP15_p187g30 0.26 -1.7 22,617 + HP15_p187g30 0.68 -0.4 22,617 + HP15_p187g30 0.68 -0.4 22,632 + HP15_p187g30 0.74 +0.0 22,632 + HP15_p187g30 0.74 -1.4 22,632 + HP15_p187g30 0.74 +1.3 22,640 - HP15_p187g30 0.78 +0.3 22,651 + HP15_p187g30 0.83 -0.8 22,659 - HP15_p187g30 0.86 +0.9 22,735 - +1.7 22,737 + +2.0 22,737 + -0.3 22,744 + -0.4 22,744 + +0.9 22,744 + -1.7 22,749 + -0.7 22,749 + +1.2 22,749 + +0.1 22,749 + +0.3 22,749 + +1.5 22,749 + +1.3 22,749 + +1.3 22,749 + +1.8 22,749 + -0.4 22,757 - +1.5 22,757 - -1.1 22,757 - -0.9 22,757 - +0.6 22,757 - -1.1 22,757 - -0.2 22,880 - +0.3 22,886 + -0.7 22,894 - -0.3 22,894 - +0.6 22,904 - -0.4 22,986 + +0.6 23,013 - -0.7 23,036 - +0.3 23,051 + HP15_p187g31 0.13 +0.9 23,080 + HP15_p187g31 0.15 -0.7 23,149 + HP15_p187g31 0.21 +0.1 23,150 + HP15_p187g31 0.21 -0.7 23,157 - HP15_p187g31 0.22 +0.3 23,157 - HP15_p187g31 0.22 +1.1 23,157 - HP15_p187g31 0.22 -1.0 23,157 - HP15_p187g31 0.22 +2.3 23,167 + HP15_p187g31 0.23 +1.3 23,204 + HP15_p187g31 0.26 +0.9 23,204 + HP15_p187g31 0.26 -1.2 23,212 - HP15_p187g31 0.27 -0.1 23,217 - HP15_p187g31 0.27 +1.0 23,233 - HP15_p187g31 0.28 +2.3 23,297 - HP15_p187g31 0.34 -0.7 23,298 - HP15_p187g31 0.34 -0.2 23,329 + HP15_p187g31 0.37 -0.2 23,339 - HP15_p187g31 0.38 -0.5 23,377 + HP15_p187g31 0.41 +0.3 23,382 + HP15_p187g31 0.41 -0.0 23,390 - HP15_p187g31 0.42 +0.6 23,395 + HP15_p187g31 0.42 +0.1 23,395 + HP15_p187g31 0.42 +1.7 23,395 + HP15_p187g31 0.42 +0.9 23,395 - HP15_p187g31 0.42 -1.4 23,403 - HP15_p187g31 0.43 -0.8 23,405 + HP15_p187g31 0.43 +1.9 23,405 + HP15_p187g31 0.43 +1.0 23,407 + HP15_p187g31 0.43 -0.7 23,412 + HP15_p187g31 0.44 -0.7 23,413 - HP15_p187g31 0.44 +1.3 23,413 - HP15_p187g31 0.44 +1.5 23,442 - HP15_p187g31 0.46 -1.2 23,511 + HP15_p187g31 0.52 -0.1 23,519 - HP15_p187g31 0.53 +1.6 23,528 - HP15_p187g31 0.54 -0.1 23,547 + HP15_p187g31 0.55 -1.0 23,547 + HP15_p187g31 0.55 +0.3 23,560 + HP15_p187g31 0.57 +0.1 23,612 - HP15_p187g31 0.61 +1.5 23,651 + HP15_p187g31 0.64 +0.8 23,723 - HP15_p187g31 0.71 -1.9 23,723 - HP15_p187g31 0.71 +1.1 23,744 + HP15_p187g31 0.72 +0.3 23,744 + HP15_p187g31 0.72 +0.7 23,744 + HP15_p187g31 0.72 +2.1 23,752 - HP15_p187g31 0.73 +1.2 23,752 - HP15_p187g31 0.73 -1.0 23,907 + HP15_p187g31 0.86 +2.0 23,929 + HP15_p187g31 0.88 -0.3 23,929 + HP15_p187g31 0.88 -0.1 23,937 - HP15_p187g31 0.89 +1.1 23,937 - HP15_p187g31 0.89 +1.4 24,044 - +1.0 24,063 + +0.3 24,071 - -0.7 24,176 - +0.1 24,184 + +0.1 24,184 + +0.3 24,184 + -0.1 24,184 + +1.7 24,184 + -0.0 24,184 + +0.1 24,184 + +3.2 24,184 + +1.2 24,184 + -1.2 24,192 - +1.3 24,192 - -1.7 24,192 - +1.5 24,192 - -0.2 24,192 - +1.2 24,192 - +1.6 24,192 - -2.5 24,192 - +1.3 24,192 - +1.0 24,192 - -0.1 24,234 + +1.8 24,319 - -0.1 24,339 + +0.3 24,339 + +1.6 24,347 - +1.8 24,347 - +0.9 24,365 + -0.8 24,365 + +1.1 24,379 - +3.7 24,442 - +0.3 24,457 + -0.6 24,497 - HP15_p187g32 0.11 -0.7 24,593 + HP15_p187g32 0.22 +0.3 24,611 + HP15_p187g32 0.24 +0.3 24,656 + HP15_p187g32 0.29 +1.7 24,699 + HP15_p187g32 0.34 -1.2 24,785 + HP15_p187g32 0.44 -1.2 24,816 - HP15_p187g32 0.48 -1.2 24,816 - HP15_p187g32 0.48 -1.2 24,826 + HP15_p187g32 0.49 -0.2 24,894 + HP15_p187g32 0.57 +0.0 24,894 + HP15_p187g32 0.57 -2.7 24,894 + HP15_p187g32 0.57 -1.3 24,894 + HP15_p187g32 0.57 +0.1 24,894 + HP15_p187g32 0.57 -0.2 24,894 + HP15_p187g32 0.57 +0.8 24,902 - HP15_p187g32 0.58 -0.7 24,902 - HP15_p187g32 0.58 +0.9 24,946 + HP15_p187g32 0.63 -0.0 24,973 + HP15_p187g32 0.66 +1.2 24,981 - HP15_p187g32 0.67 +0.6 25,003 - HP15_p187g32 0.70 -0.7 25,010 + HP15_p187g32 0.71 -0.2 25,017 + HP15_p187g32 0.71 -0.6 25,020 - HP15_p187g32 0.72 +1.7 25,025 - HP15_p187g32 0.72 +0.3 25,032 + HP15_p187g32 0.73 +1.1
Or see this region's nucleotide sequence