Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g31

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g28 and HP15_p187g29 are separated by 34 nucleotidesHP15_p187g29 and HP15_p187g30 are separated by 125 nucleotidesHP15_p187g30 and HP15_p187g31 are separated by 214 nucleotidesHP15_p187g31 and HP15_p187g32 are separated by 343 nucleotides HP15_p187g28: HP15_p187g28 - hypothetical protein, at 21,792 to 21,929 _p187g28 HP15_p187g29: HP15_p187g29 - hypothetical protein, at 21,964 to 22,341 _p187g29 HP15_p187g30: HP15_p187g30 - conserved hypothetical protein, membrane, at 22,467 to 22,688 _p187g30 HP15_p187g31: HP15_p187g31 - protein containing nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase domain, at 22,903 to 24,063 _p187g31 HP15_p187g32: HP15_p187g32 - helix-turn-helix- domain containing protein AraC-type, at 24,407 to 25,261 _p187g32 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2 3at 21.928 kb on + strandat 21.928 kb on + strandat 21.999 kb on + strandat 21.999 kb on + strandat 22.007 kb on - strand, within HP15_p187g29at 22.007 kb on - strand, within HP15_p187g29at 22.021 kb on - strand, within HP15_p187g29at 22.021 kb on - strand, within HP15_p187g29at 22.057 kb on - strand, within HP15_p187g29at 22.120 kb on + strand, within HP15_p187g29at 22.223 kb on + strand, within HP15_p187g29at 22.223 kb on + strand, within HP15_p187g29at 22.225 kb on + strand, within HP15_p187g29at 22.231 kb on - strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.260 kb on + strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.268 kb on - strand, within HP15_p187g29at 22.313 kb on + strandat 22.313 kb on + strandat 22.313 kb on + strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.321 kb on - strandat 22.326 kb on - strandat 22.331 kb on - strandat 22.413 kb on - strandat 22.413 kb on - strandat 22.478 kb on - strandat 22.483 kb on + strandat 22.525 kb on - strand, within HP15_p187g30at 22.525 kb on - strand, within HP15_p187g30at 22.617 kb on + strand, within HP15_p187g30at 22.617 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.632 kb on + strand, within HP15_p187g30at 22.640 kb on - strand, within HP15_p187g30at 22.651 kb on + strand, within HP15_p187g30at 22.659 kb on - strand, within HP15_p187g30at 22.735 kb on - strandat 22.737 kb on + strandat 22.737 kb on + strandat 22.744 kb on + strandat 22.744 kb on + strandat 22.744 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.749 kb on + strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.757 kb on - strandat 22.880 kb on - strandat 22.886 kb on + strandat 22.894 kb on - strandat 22.894 kb on - strandat 22.904 kb on - strandat 22.986 kb on + strandat 23.013 kb on - strandat 23.036 kb on - strandat 23.051 kb on + strand, within HP15_p187g31at 23.080 kb on + strand, within HP15_p187g31at 23.149 kb on + strand, within HP15_p187g31at 23.150 kb on + strand, within HP15_p187g31at 23.157 kb on - strand, within HP15_p187g31at 23.157 kb on - strand, within HP15_p187g31at 23.157 kb on - strand, within HP15_p187g31at 23.157 kb on - strand, within HP15_p187g31at 23.167 kb on + strand, within HP15_p187g31at 23.204 kb on + strand, within HP15_p187g31at 23.204 kb on + strand, within HP15_p187g31at 23.212 kb on - strand, within HP15_p187g31at 23.217 kb on - strand, within HP15_p187g31at 23.233 kb on - strand, within HP15_p187g31at 23.297 kb on - strand, within HP15_p187g31at 23.298 kb on - strand, within HP15_p187g31at 23.329 kb on + strand, within HP15_p187g31at 23.339 kb on - strand, within HP15_p187g31at 23.377 kb on + strand, within HP15_p187g31at 23.382 kb on + strand, within HP15_p187g31at 23.390 kb on - strand, within HP15_p187g31at 23.395 kb on + strand, within HP15_p187g31at 23.395 kb on + strand, within HP15_p187g31at 23.395 kb on + strand, within HP15_p187g31at 23.395 kb on - strand, within HP15_p187g31at 23.403 kb on - strand, within HP15_p187g31at 23.405 kb on + strand, within HP15_p187g31at 23.405 kb on + strand, within HP15_p187g31at 23.407 kb on + strand, within HP15_p187g31at 23.412 kb on + strand, within HP15_p187g31at 23.413 kb on - strand, within HP15_p187g31at 23.413 kb on - strand, within HP15_p187g31at 23.442 kb on - strand, within HP15_p187g31at 23.511 kb on + strand, within HP15_p187g31at 23.519 kb on - strand, within HP15_p187g31at 23.528 kb on - strand, within HP15_p187g31at 23.547 kb on + strand, within HP15_p187g31at 23.547 kb on + strand, within HP15_p187g31at 23.560 kb on + strand, within HP15_p187g31at 23.612 kb on - strand, within HP15_p187g31at 23.651 kb on + strand, within HP15_p187g31at 23.723 kb on - strand, within HP15_p187g31at 23.723 kb on - strand, within HP15_p187g31at 23.744 kb on + strand, within HP15_p187g31at 23.744 kb on + strand, within HP15_p187g31at 23.744 kb on + strand, within HP15_p187g31at 23.752 kb on - strand, within HP15_p187g31at 23.752 kb on - strand, within HP15_p187g31at 23.907 kb on + strand, within HP15_p187g31at 23.929 kb on + strand, within HP15_p187g31at 23.929 kb on + strand, within HP15_p187g31at 23.937 kb on - strand, within HP15_p187g31at 23.937 kb on - strand, within HP15_p187g31at 24.044 kb on - strandat 24.063 kb on + strandat 24.071 kb on - strandat 24.176 kb on - strandat 24.184 kb on + strandat 24.184 kb on + strandat 24.184 kb on + strandat 24.184 kb on + strandat 24.184 kb on + strandat 24.184 kb on + strandat 24.184 kb on + strandat 24.184 kb on + strandat 24.184 kb on + strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.192 kb on - strandat 24.234 kb on + strandat 24.319 kb on - strandat 24.339 kb on + strandat 24.339 kb on + strandat 24.347 kb on - strandat 24.347 kb on - strandat 24.365 kb on + strandat 24.365 kb on + strandat 24.379 kb on - strandat 24.442 kb on - strandat 24.457 kb on + strandat 24.497 kb on - strand, within HP15_p187g32at 24.593 kb on + strand, within HP15_p187g32at 24.611 kb on + strand, within HP15_p187g32at 24.656 kb on + strand, within HP15_p187g32at 24.699 kb on + strand, within HP15_p187g32at 24.785 kb on + strand, within HP15_p187g32at 24.816 kb on - strand, within HP15_p187g32at 24.816 kb on - strand, within HP15_p187g32at 24.826 kb on + strand, within HP15_p187g32at 24.894 kb on + strand, within HP15_p187g32at 24.894 kb on + strand, within HP15_p187g32at 24.894 kb on + strand, within HP15_p187g32at 24.894 kb on + strand, within HP15_p187g32at 24.894 kb on + strand, within HP15_p187g32at 24.894 kb on + strand, within HP15_p187g32at 24.902 kb on - strand, within HP15_p187g32at 24.902 kb on - strand, within HP15_p187g32at 24.946 kb on + strand, within HP15_p187g32at 24.973 kb on + strand, within HP15_p187g32at 24.981 kb on - strand, within HP15_p187g32at 25.003 kb on - strand, within HP15_p187g32at 25.010 kb on + strand, within HP15_p187g32at 25.017 kb on + strand, within HP15_p187g32at 25.020 kb on - strand, within HP15_p187g32at 25.025 kb on - strand, within HP15_p187g32at 25.032 kb on + strand, within HP15_p187g32

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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21,928 + +0.9
21,928 + -0.1
21,999 + +1.6
21,999 + -0.5
22,007 - HP15_p187g29 0.11 -0.3
22,007 - HP15_p187g29 0.11 +1.5
22,021 - HP15_p187g29 0.15 -0.7
22,021 - HP15_p187g29 0.15 +1.3
22,057 - HP15_p187g29 0.25 -0.4
22,120 + HP15_p187g29 0.41 +1.8
22,223 + HP15_p187g29 0.69 +1.4
22,223 + HP15_p187g29 0.69 +1.7
22,225 + HP15_p187g29 0.69 -1.1
22,231 - HP15_p187g29 0.71 +1.3
22,260 + HP15_p187g29 0.78 +1.7
22,260 + HP15_p187g29 0.78 +1.8
22,260 + HP15_p187g29 0.78 -0.6
22,268 - HP15_p187g29 0.80 +0.3
22,268 - HP15_p187g29 0.80 +0.3
22,268 - HP15_p187g29 0.80 +0.6
22,313 + +1.2
22,313 + -1.2
22,313 + +1.9
22,321 - -1.8
22,321 - +1.4
22,321 - +1.8
22,321 - -0.7
22,321 - -1.2
22,326 - -0.3
22,331 - -1.5
22,413 - +0.9
22,413 - +0.3
22,478 - -0.1
22,483 + -0.3
22,525 - HP15_p187g30 0.26 -0.5
22,525 - HP15_p187g30 0.26 -1.7
22,617 + HP15_p187g30 0.68 -0.4
22,617 + HP15_p187g30 0.68 -0.4
22,632 + HP15_p187g30 0.74 +0.0
22,632 + HP15_p187g30 0.74 -1.4
22,632 + HP15_p187g30 0.74 +1.3
22,640 - HP15_p187g30 0.78 +0.3
22,651 + HP15_p187g30 0.83 -0.8
22,659 - HP15_p187g30 0.86 +0.9
22,735 - +1.7
22,737 + +2.0
22,737 + -0.3
22,744 + -0.4
22,744 + +0.9
22,744 + -1.7
22,749 + -0.7
22,749 + +1.2
22,749 + +0.1
22,749 + +0.3
22,749 + +1.5
22,749 + +1.3
22,749 + +1.3
22,749 + +1.8
22,749 + -0.4
22,757 - +1.5
22,757 - -1.1
22,757 - -0.9
22,757 - +0.6
22,757 - -1.1
22,757 - -0.2
22,880 - +0.3
22,886 + -0.7
22,894 - -0.3
22,894 - +0.6
22,904 - -0.4
22,986 + +0.6
23,013 - -0.7
23,036 - +0.3
23,051 + HP15_p187g31 0.13 +0.9
23,080 + HP15_p187g31 0.15 -0.7
23,149 + HP15_p187g31 0.21 +0.1
23,150 + HP15_p187g31 0.21 -0.7
23,157 - HP15_p187g31 0.22 +0.3
23,157 - HP15_p187g31 0.22 +1.1
23,157 - HP15_p187g31 0.22 -1.0
23,157 - HP15_p187g31 0.22 +2.3
23,167 + HP15_p187g31 0.23 +1.3
23,204 + HP15_p187g31 0.26 +0.9
23,204 + HP15_p187g31 0.26 -1.2
23,212 - HP15_p187g31 0.27 -0.1
23,217 - HP15_p187g31 0.27 +1.0
23,233 - HP15_p187g31 0.28 +2.3
23,297 - HP15_p187g31 0.34 -0.7
23,298 - HP15_p187g31 0.34 -0.2
23,329 + HP15_p187g31 0.37 -0.2
23,339 - HP15_p187g31 0.38 -0.5
23,377 + HP15_p187g31 0.41 +0.3
23,382 + HP15_p187g31 0.41 -0.0
23,390 - HP15_p187g31 0.42 +0.6
23,395 + HP15_p187g31 0.42 +0.1
23,395 + HP15_p187g31 0.42 +1.7
23,395 + HP15_p187g31 0.42 +0.9
23,395 - HP15_p187g31 0.42 -1.4
23,403 - HP15_p187g31 0.43 -0.8
23,405 + HP15_p187g31 0.43 +1.9
23,405 + HP15_p187g31 0.43 +1.0
23,407 + HP15_p187g31 0.43 -0.7
23,412 + HP15_p187g31 0.44 -0.7
23,413 - HP15_p187g31 0.44 +1.3
23,413 - HP15_p187g31 0.44 +1.5
23,442 - HP15_p187g31 0.46 -1.2
23,511 + HP15_p187g31 0.52 -0.1
23,519 - HP15_p187g31 0.53 +1.6
23,528 - HP15_p187g31 0.54 -0.1
23,547 + HP15_p187g31 0.55 -1.0
23,547 + HP15_p187g31 0.55 +0.3
23,560 + HP15_p187g31 0.57 +0.1
23,612 - HP15_p187g31 0.61 +1.5
23,651 + HP15_p187g31 0.64 +0.8
23,723 - HP15_p187g31 0.71 -1.9
23,723 - HP15_p187g31 0.71 +1.1
23,744 + HP15_p187g31 0.72 +0.3
23,744 + HP15_p187g31 0.72 +0.7
23,744 + HP15_p187g31 0.72 +2.1
23,752 - HP15_p187g31 0.73 +1.2
23,752 - HP15_p187g31 0.73 -1.0
23,907 + HP15_p187g31 0.86 +2.0
23,929 + HP15_p187g31 0.88 -0.3
23,929 + HP15_p187g31 0.88 -0.1
23,937 - HP15_p187g31 0.89 +1.1
23,937 - HP15_p187g31 0.89 +1.4
24,044 - +1.0
24,063 + +0.3
24,071 - -0.7
24,176 - +0.1
24,184 + +0.1
24,184 + +0.3
24,184 + -0.1
24,184 + +1.7
24,184 + -0.0
24,184 + +0.1
24,184 + +3.2
24,184 + +1.2
24,184 + -1.2
24,192 - +1.3
24,192 - -1.7
24,192 - +1.5
24,192 - -0.2
24,192 - +1.2
24,192 - +1.6
24,192 - -2.5
24,192 - +1.3
24,192 - +1.0
24,192 - -0.1
24,234 + +1.8
24,319 - -0.1
24,339 + +0.3
24,339 + +1.6
24,347 - +1.8
24,347 - +0.9
24,365 + -0.8
24,365 + +1.1
24,379 - +3.7
24,442 - +0.3
24,457 + -0.6
24,497 - HP15_p187g32 0.11 -0.7
24,593 + HP15_p187g32 0.22 +0.3
24,611 + HP15_p187g32 0.24 +0.3
24,656 + HP15_p187g32 0.29 +1.7
24,699 + HP15_p187g32 0.34 -1.2
24,785 + HP15_p187g32 0.44 -1.2
24,816 - HP15_p187g32 0.48 -1.2
24,816 - HP15_p187g32 0.48 -1.2
24,826 + HP15_p187g32 0.49 -0.2
24,894 + HP15_p187g32 0.57 +0.0
24,894 + HP15_p187g32 0.57 -2.7
24,894 + HP15_p187g32 0.57 -1.3
24,894 + HP15_p187g32 0.57 +0.1
24,894 + HP15_p187g32 0.57 -0.2
24,894 + HP15_p187g32 0.57 +0.8
24,902 - HP15_p187g32 0.58 -0.7
24,902 - HP15_p187g32 0.58 +0.9
24,946 + HP15_p187g32 0.63 -0.0
24,973 + HP15_p187g32 0.66 +1.2
24,981 - HP15_p187g32 0.67 +0.6
25,003 - HP15_p187g32 0.70 -0.7
25,010 + HP15_p187g32 0.71 -0.2
25,017 + HP15_p187g32 0.71 -0.6
25,020 - HP15_p187g32 0.72 +1.7
25,025 - HP15_p187g32 0.72 +0.3
25,032 + HP15_p187g32 0.73 +1.1

Or see this region's nucleotide sequence