Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3570 and HP15_3571 overlap by 8 nucleotides HP15_3571 and HP15_3572 overlap by 7 nucleotides
HP15_3570: HP15_3570 - membrane protein containing DUF6, transmembrane, at 3,761,862 to 3,762,830
_3570
HP15_3571: HP15_3571 - carbohydrate-binding family V/XII, at 3,762,823 to 3,763,368
_3571
HP15_3572: HP15_3572 - aminotransferase, classes I and II, at 3,763,362 to 3,764,567
_3572
Position (kb)
3762
3763
3764 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3761.849 kb on - strand at 3761.854 kb on - strand at 3761.854 kb on - strand at 3761.856 kb on + strand at 3761.906 kb on + strand at 3761.906 kb on + strand at 3762.003 kb on + strand, within HP15_3570 at 3762.021 kb on - strand, within HP15_3570 at 3762.131 kb on + strand, within HP15_3570 at 3762.139 kb on - strand, within HP15_3570 at 3762.178 kb on + strand, within HP15_3570 at 3762.183 kb on + strand, within HP15_3570 at 3762.191 kb on - strand, within HP15_3570 at 3762.191 kb on - strand, within HP15_3570 at 3762.335 kb on - strand, within HP15_3570 at 3762.378 kb on + strand, within HP15_3570 at 3762.378 kb on + strand, within HP15_3570 at 3762.590 kb on - strand, within HP15_3570 at 3762.627 kb on - strand, within HP15_3570 at 3762.629 kb on + strand, within HP15_3570 at 3762.661 kb on - strand, within HP15_3570 at 3762.777 kb on + strand at 3762.934 kb on + strand, within HP15_3571 at 3762.939 kb on + strand, within HP15_3571 at 3762.954 kb on + strand, within HP15_3571 at 3762.962 kb on - strand, within HP15_3571 at 3763.145 kb on - strand, within HP15_3571 at 3763.148 kb on + strand, within HP15_3571 at 3763.158 kb on + strand, within HP15_3571 at 3763.186 kb on + strand, within HP15_3571 at 3763.261 kb on + strand, within HP15_3571 at 3763.274 kb on - strand, within HP15_3571 at 3763.289 kb on + strand, within HP15_3571 at 3763.352 kb on - strand at 3763.352 kb on - strand at 3763.354 kb on + strand at 3763.391 kb on - strand at 3763.391 kb on - strand at 3763.472 kb on - strand at 3763.474 kb on + strand at 3763.542 kb on + strand, within HP15_3572 at 3763.580 kb on - strand, within HP15_3572 at 3763.733 kb on + strand, within HP15_3572 at 3763.741 kb on - strand, within HP15_3572 at 3763.808 kb on + strand, within HP15_3572 at 3763.817 kb on + strand, within HP15_3572 at 3763.836 kb on - strand, within HP15_3572 at 3763.858 kb on + strand, within HP15_3572 at 3763.866 kb on - strand, within HP15_3572 at 3763.901 kb on - strand, within HP15_3572 at 3763.983 kb on + strand, within HP15_3572 at 3764.011 kb on + strand, within HP15_3572 at 3764.036 kb on + strand, within HP15_3572 at 3764.039 kb on - strand, within HP15_3572 at 3764.046 kb on - strand, within HP15_3572 at 3764.046 kb on - strand, within HP15_3572 at 3764.058 kb on - strand, within HP15_3572 at 3764.092 kb on - strand, within HP15_3572 at 3764.107 kb on - strand, within HP15_3572 at 3764.138 kb on - strand, within HP15_3572 at 3764.178 kb on + strand, within HP15_3572 at 3764.186 kb on - strand, within HP15_3572 at 3764.279 kb on - strand, within HP15_3572 at 3764.284 kb on - strand, within HP15_3572 at 3764.357 kb on + strand, within HP15_3572 at 3764.365 kb on - strand, within HP15_3572 at 3764.365 kb on - strand, within HP15_3572
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,761,849 - +0.1 3,761,854 - +1.2 3,761,854 - +0.3 3,761,856 + +0.9 3,761,906 + -0.4 3,761,906 + +1.2 3,762,003 + HP15_3570 0.15 -1.1 3,762,021 - HP15_3570 0.16 -0.5 3,762,131 + HP15_3570 0.28 -1.0 3,762,139 - HP15_3570 0.29 -0.5 3,762,178 + HP15_3570 0.33 -0.5 3,762,183 + HP15_3570 0.33 -0.0 3,762,191 - HP15_3570 0.34 -0.3 3,762,191 - HP15_3570 0.34 -0.4 3,762,335 - HP15_3570 0.49 -0.5 3,762,378 + HP15_3570 0.53 -0.6 3,762,378 + HP15_3570 0.53 -0.4 3,762,590 - HP15_3570 0.75 +1.6 3,762,627 - HP15_3570 0.79 -0.7 3,762,629 + HP15_3570 0.79 -2.0 3,762,661 - HP15_3570 0.82 -0.7 3,762,777 + +1.1 3,762,934 + HP15_3571 0.20 +0.3 3,762,939 + HP15_3571 0.21 +0.9 3,762,954 + HP15_3571 0.24 +1.8 3,762,962 - HP15_3571 0.25 -0.7 3,763,145 - HP15_3571 0.59 +0.3 3,763,148 + HP15_3571 0.60 -0.5 3,763,158 + HP15_3571 0.61 +1.7 3,763,186 + HP15_3571 0.66 -0.6 3,763,261 + HP15_3571 0.80 +1.9 3,763,274 - HP15_3571 0.83 -0.4 3,763,289 + HP15_3571 0.85 +1.8 3,763,352 - -0.6 3,763,352 - -0.3 3,763,354 + +1.3 3,763,391 - -1.1 3,763,391 - +1.8 3,763,472 - -0.9 3,763,474 + +1.2 3,763,542 + HP15_3572 0.15 -0.0 3,763,580 - HP15_3572 0.18 -0.6 3,763,733 + HP15_3572 0.31 +0.7 3,763,741 - HP15_3572 0.31 +1.3 3,763,808 + HP15_3572 0.37 -0.9 3,763,817 + HP15_3572 0.38 -0.7 3,763,836 - HP15_3572 0.39 -0.4 3,763,858 + HP15_3572 0.41 +0.4 3,763,866 - HP15_3572 0.42 +0.1 3,763,901 - HP15_3572 0.45 +0.1 3,763,983 + HP15_3572 0.51 -0.6 3,764,011 + HP15_3572 0.54 -0.5 3,764,036 + HP15_3572 0.56 -1.0 3,764,039 - HP15_3572 0.56 +0.1 3,764,046 - HP15_3572 0.57 -0.7 3,764,046 - HP15_3572 0.57 +1.1 3,764,058 - HP15_3572 0.58 +0.2 3,764,092 - HP15_3572 0.61 -0.4 3,764,107 - HP15_3572 0.62 -2.7 3,764,138 - HP15_3572 0.64 +1.5 3,764,178 + HP15_3572 0.68 -0.0 3,764,186 - HP15_3572 0.68 +0.9 3,764,279 - HP15_3572 0.76 -0.1 3,764,284 - HP15_3572 0.76 -0.3 3,764,357 + HP15_3572 0.83 -0.5 3,764,365 - HP15_3572 0.83 -0.3 3,764,365 - HP15_3572 0.83 -0.1
Or see this region's nucleotide sequence