Strain Fitness in Marinobacter adhaerens HP15 around HP15_3560

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3559 and HP15_3560 are separated by 249 nucleotidesHP15_3560 and HP15_3561 are separated by 148 nucleotidesHP15_3561 and HP15_3562 are separated by 133 nucleotides HP15_3559: HP15_3559 - endonuclease, at 3,748,915 to 3,749,784 _3559 HP15_3560: HP15_3560 - poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit, at 3,750,034 to 3,751,185 _3560 HP15_3561: HP15_3561 - haloacid dehalogenase, type II, at 3,751,334 to 3,752,005 _3561 HP15_3562: HP15_3562 - esterase/lipase, at 3,752,139 to 3,753,362 _3562 Position (kb) 3750 3751 3752Strain fitness (log2 ratio) -2 -1 0 1 2at 3749.039 kb on - strand, within HP15_3559at 3749.069 kb on + strand, within HP15_3559at 3749.237 kb on + strand, within HP15_3559at 3749.255 kb on - strand, within HP15_3559at 3749.292 kb on - strand, within HP15_3559at 3749.292 kb on - strand, within HP15_3559at 3749.294 kb on + strand, within HP15_3559at 3749.305 kb on + strand, within HP15_3559at 3749.392 kb on + strand, within HP15_3559at 3749.518 kb on + strand, within HP15_3559at 3749.518 kb on + strand, within HP15_3559at 3749.526 kb on - strand, within HP15_3559at 3749.526 kb on - strand, within HP15_3559at 3749.526 kb on - strand, within HP15_3559at 3749.530 kb on + strand, within HP15_3559at 3749.568 kb on - strand, within HP15_3559at 3749.599 kb on + strand, within HP15_3559at 3749.612 kb on - strand, within HP15_3559at 3749.643 kb on - strand, within HP15_3559at 3749.643 kb on - strand, within HP15_3559at 3749.658 kb on - strand, within HP15_3559at 3749.760 kb on + strandat 3749.760 kb on + strandat 3749.760 kb on + strandat 3749.779 kb on + strandat 3749.861 kb on + strandat 3749.861 kb on + strandat 3749.869 kb on - strandat 3749.882 kb on + strandat 3749.882 kb on + strandat 3749.882 kb on + strandat 3749.882 kb on + strandat 3749.882 kb on + strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.890 kb on - strandat 3749.895 kb on - strandat 3749.918 kb on + strandat 3749.926 kb on - strandat 3749.952 kb on + strandat 3750.012 kb on - strandat 3750.091 kb on + strandat 3750.099 kb on - strandat 3750.145 kb on - strandat 3750.149 kb on - strandat 3750.171 kb on + strand, within HP15_3560at 3750.245 kb on - strand, within HP15_3560at 3750.407 kb on + strand, within HP15_3560at 3750.422 kb on + strand, within HP15_3560at 3750.453 kb on + strand, within HP15_3560at 3750.521 kb on - strand, within HP15_3560at 3750.543 kb on + strand, within HP15_3560at 3750.543 kb on + strand, within HP15_3560at 3750.543 kb on + strand, within HP15_3560at 3750.543 kb on + strand, within HP15_3560at 3750.703 kb on + strand, within HP15_3560at 3750.711 kb on - strand, within HP15_3560at 3750.899 kb on + strand, within HP15_3560at 3750.902 kb on - strand, within HP15_3560at 3750.930 kb on + strand, within HP15_3560at 3750.976 kb on - strand, within HP15_3560at 3751.062 kb on - strand, within HP15_3560at 3751.072 kb on + strandat 3751.072 kb on + strandat 3751.108 kb on - strandat 3751.143 kb on - strandat 3751.148 kb on - strandat 3751.180 kb on + strandat 3751.186 kb on + strandat 3751.201 kb on - strandat 3751.272 kb on + strandat 3751.305 kb on + strandat 3751.332 kb on + strandat 3751.340 kb on - strandat 3751.340 kb on - strandat 3751.348 kb on + strandat 3751.348 kb on + strandat 3751.369 kb on - strandat 3751.447 kb on - strand, within HP15_3561at 3751.569 kb on + strand, within HP15_3561at 3751.569 kb on + strand, within HP15_3561at 3751.596 kb on + strand, within HP15_3561at 3751.596 kb on + strand, within HP15_3561at 3751.604 kb on - strand, within HP15_3561at 3751.741 kb on - strand, within HP15_3561at 3751.756 kb on - strand, within HP15_3561at 3751.785 kb on - strand, within HP15_3561at 3751.813 kb on - strand, within HP15_3561at 3751.858 kb on - strand, within HP15_3561at 3751.909 kb on + strand, within HP15_3561at 3751.954 kb on - strandat 3752.011 kb on - strandat 3752.011 kb on - strandat 3752.032 kb on + strandat 3752.037 kb on + strandat 3752.051 kb on + strandat 3752.162 kb on + strandat 3752.171 kb on + strandat 3752.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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3,749,039 - HP15_3559 0.14 -0.4
3,749,069 + HP15_3559 0.18 +0.6
3,749,237 + HP15_3559 0.37 -0.7
3,749,255 - HP15_3559 0.39 -0.2
3,749,292 - HP15_3559 0.43 +0.2
3,749,292 - HP15_3559 0.43 -0.2
3,749,294 + HP15_3559 0.44 +0.3
3,749,305 + HP15_3559 0.45 -0.9
3,749,392 + HP15_3559 0.55 +0.9
3,749,518 + HP15_3559 0.69 -0.0
3,749,518 + HP15_3559 0.69 +0.1
3,749,526 - HP15_3559 0.70 +0.0
3,749,526 - HP15_3559 0.70 +0.6
3,749,526 - HP15_3559 0.70 +1.0
3,749,530 + HP15_3559 0.71 -2.1
3,749,568 - HP15_3559 0.75 +1.9
3,749,599 + HP15_3559 0.79 -0.2
3,749,612 - HP15_3559 0.80 +0.3
3,749,643 - HP15_3559 0.84 -0.8
3,749,643 - HP15_3559 0.84 +0.7
3,749,658 - HP15_3559 0.85 -0.6
3,749,760 + -0.7
3,749,760 + +1.0
3,749,760 + -0.5
3,749,779 + -0.6
3,749,861 + -0.1
3,749,861 + -0.7
3,749,869 - -0.7
3,749,882 + -0.1
3,749,882 + -0.4
3,749,882 + +1.3
3,749,882 + -0.3
3,749,882 + -0.1
3,749,890 - -0.6
3,749,890 - +2.3
3,749,890 - -0.6
3,749,890 - +1.6
3,749,890 - -0.7
3,749,890 - +1.1
3,749,890 - -0.2
3,749,895 - -0.1
3,749,918 + +0.3
3,749,926 - -0.2
3,749,952 + +0.2
3,750,012 - -0.3
3,750,091 + +1.1
3,750,099 - +0.3
3,750,145 - -0.4
3,750,149 - +1.8
3,750,171 + HP15_3560 0.12 +0.3
3,750,245 - HP15_3560 0.18 -1.3
3,750,407 + HP15_3560 0.32 -2.7
3,750,422 + HP15_3560 0.34 +2.3
3,750,453 + HP15_3560 0.36 +1.4
3,750,521 - HP15_3560 0.42 -0.2
3,750,543 + HP15_3560 0.44 +1.7
3,750,543 + HP15_3560 0.44 -0.7
3,750,543 + HP15_3560 0.44 +1.6
3,750,543 + HP15_3560 0.44 +0.0
3,750,703 + HP15_3560 0.58 +0.6
3,750,711 - HP15_3560 0.59 +1.2
3,750,899 + HP15_3560 0.75 -0.4
3,750,902 - HP15_3560 0.75 +2.5
3,750,930 + HP15_3560 0.78 +2.3
3,750,976 - HP15_3560 0.82 +0.6
3,751,062 - HP15_3560 0.89 +1.3
3,751,072 + +0.8
3,751,072 + -1.0
3,751,108 - +1.0
3,751,143 - +1.9
3,751,148 - +1.5
3,751,180 + +0.3
3,751,186 + +0.1
3,751,201 - +1.7
3,751,272 + -0.4
3,751,305 + -0.6
3,751,332 + +0.1
3,751,340 - -1.3
3,751,340 - +0.6
3,751,348 + -0.8
3,751,348 + +1.2
3,751,369 - -1.0
3,751,447 - HP15_3561 0.17 -0.1
3,751,569 + HP15_3561 0.35 -0.0
3,751,569 + HP15_3561 0.35 +1.6
3,751,596 + HP15_3561 0.39 -0.3
3,751,596 + HP15_3561 0.39 +1.8
3,751,604 - HP15_3561 0.40 +0.1
3,751,741 - HP15_3561 0.61 +0.9
3,751,756 - HP15_3561 0.63 +0.8
3,751,785 - HP15_3561 0.67 +1.7
3,751,813 - HP15_3561 0.71 +1.4
3,751,858 - HP15_3561 0.78 +1.3
3,751,909 + HP15_3561 0.86 -0.5
3,751,954 - +0.3
3,752,011 - +1.3
3,752,011 - +1.4
3,752,032 + +1.9
3,752,037 + +0.2
3,752,051 + +1.5
3,752,162 + +0.1
3,752,171 + -0.2
3,752,185 - -0.1

Or see this region's nucleotide sequence