Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3559 and HP15_3560 are separated by 249 nucleotides HP15_3560 and HP15_3561 are separated by 148 nucleotides HP15_3561 and HP15_3562 are separated by 133 nucleotides
HP15_3559: HP15_3559 - endonuclease, at 3,748,915 to 3,749,784
_3559
HP15_3560: HP15_3560 - poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit, at 3,750,034 to 3,751,185
_3560
HP15_3561: HP15_3561 - haloacid dehalogenase, type II, at 3,751,334 to 3,752,005
_3561
HP15_3562: HP15_3562 - esterase/lipase, at 3,752,139 to 3,753,362
_3562
Position (kb)
3750
3751
3752 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3749.039 kb on - strand, within HP15_3559 at 3749.069 kb on + strand, within HP15_3559 at 3749.237 kb on + strand, within HP15_3559 at 3749.255 kb on - strand, within HP15_3559 at 3749.292 kb on - strand, within HP15_3559 at 3749.292 kb on - strand, within HP15_3559 at 3749.294 kb on + strand, within HP15_3559 at 3749.305 kb on + strand, within HP15_3559 at 3749.392 kb on + strand, within HP15_3559 at 3749.518 kb on + strand, within HP15_3559 at 3749.518 kb on + strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.526 kb on - strand, within HP15_3559 at 3749.530 kb on + strand, within HP15_3559 at 3749.568 kb on - strand, within HP15_3559 at 3749.599 kb on + strand, within HP15_3559 at 3749.612 kb on - strand, within HP15_3559 at 3749.643 kb on - strand, within HP15_3559 at 3749.643 kb on - strand, within HP15_3559 at 3749.658 kb on - strand, within HP15_3559 at 3749.760 kb on + strand at 3749.760 kb on + strand at 3749.760 kb on + strand at 3749.779 kb on + strand at 3749.861 kb on + strand at 3749.861 kb on + strand at 3749.869 kb on - strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.882 kb on + strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.890 kb on - strand at 3749.895 kb on - strand at 3749.918 kb on + strand at 3749.926 kb on - strand at 3749.952 kb on + strand at 3750.012 kb on - strand at 3750.091 kb on + strand at 3750.099 kb on - strand at 3750.145 kb on - strand at 3750.149 kb on - strand at 3750.171 kb on + strand, within HP15_3560 at 3750.245 kb on - strand, within HP15_3560 at 3750.407 kb on + strand, within HP15_3560 at 3750.422 kb on + strand, within HP15_3560 at 3750.453 kb on + strand, within HP15_3560 at 3750.521 kb on - strand, within HP15_3560 at 3750.543 kb on + strand, within HP15_3560 at 3750.543 kb on + strand, within HP15_3560 at 3750.543 kb on + strand, within HP15_3560 at 3750.543 kb on + strand, within HP15_3560 at 3750.703 kb on + strand, within HP15_3560 at 3750.711 kb on - strand, within HP15_3560 at 3750.899 kb on + strand, within HP15_3560 at 3750.902 kb on - strand, within HP15_3560 at 3750.930 kb on + strand, within HP15_3560 at 3750.976 kb on - strand, within HP15_3560 at 3751.062 kb on - strand, within HP15_3560 at 3751.072 kb on + strand at 3751.072 kb on + strand at 3751.108 kb on - strand at 3751.143 kb on - strand at 3751.148 kb on - strand at 3751.180 kb on + strand at 3751.186 kb on + strand at 3751.201 kb on - strand at 3751.272 kb on + strand at 3751.305 kb on + strand at 3751.332 kb on + strand at 3751.340 kb on - strand at 3751.340 kb on - strand at 3751.348 kb on + strand at 3751.348 kb on + strand at 3751.369 kb on - strand at 3751.447 kb on - strand, within HP15_3561 at 3751.569 kb on + strand, within HP15_3561 at 3751.569 kb on + strand, within HP15_3561 at 3751.596 kb on + strand, within HP15_3561 at 3751.596 kb on + strand, within HP15_3561 at 3751.604 kb on - strand, within HP15_3561 at 3751.741 kb on - strand, within HP15_3561 at 3751.756 kb on - strand, within HP15_3561 at 3751.785 kb on - strand, within HP15_3561 at 3751.813 kb on - strand, within HP15_3561 at 3751.858 kb on - strand, within HP15_3561 at 3751.909 kb on + strand, within HP15_3561 at 3751.954 kb on - strand at 3752.011 kb on - strand at 3752.011 kb on - strand at 3752.032 kb on + strand at 3752.037 kb on + strand at 3752.051 kb on + strand at 3752.162 kb on + strand at 3752.171 kb on + strand at 3752.185 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,749,039 - HP15_3559 0.14 -0.4 3,749,069 + HP15_3559 0.18 +0.6 3,749,237 + HP15_3559 0.37 -0.7 3,749,255 - HP15_3559 0.39 -0.2 3,749,292 - HP15_3559 0.43 +0.2 3,749,292 - HP15_3559 0.43 -0.2 3,749,294 + HP15_3559 0.44 +0.3 3,749,305 + HP15_3559 0.45 -0.9 3,749,392 + HP15_3559 0.55 +0.9 3,749,518 + HP15_3559 0.69 -0.0 3,749,518 + HP15_3559 0.69 +0.1 3,749,526 - HP15_3559 0.70 +0.0 3,749,526 - HP15_3559 0.70 +0.6 3,749,526 - HP15_3559 0.70 +1.0 3,749,530 + HP15_3559 0.71 -2.1 3,749,568 - HP15_3559 0.75 +1.9 3,749,599 + HP15_3559 0.79 -0.2 3,749,612 - HP15_3559 0.80 +0.3 3,749,643 - HP15_3559 0.84 -0.8 3,749,643 - HP15_3559 0.84 +0.7 3,749,658 - HP15_3559 0.85 -0.6 3,749,760 + -0.7 3,749,760 + +1.0 3,749,760 + -0.5 3,749,779 + -0.6 3,749,861 + -0.1 3,749,861 + -0.7 3,749,869 - -0.7 3,749,882 + -0.1 3,749,882 + -0.4 3,749,882 + +1.3 3,749,882 + -0.3 3,749,882 + -0.1 3,749,890 - -0.6 3,749,890 - +2.3 3,749,890 - -0.6 3,749,890 - +1.6 3,749,890 - -0.7 3,749,890 - +1.1 3,749,890 - -0.2 3,749,895 - -0.1 3,749,918 + +0.3 3,749,926 - -0.2 3,749,952 + +0.2 3,750,012 - -0.3 3,750,091 + +1.1 3,750,099 - +0.3 3,750,145 - -0.4 3,750,149 - +1.8 3,750,171 + HP15_3560 0.12 +0.3 3,750,245 - HP15_3560 0.18 -1.3 3,750,407 + HP15_3560 0.32 -2.7 3,750,422 + HP15_3560 0.34 +2.3 3,750,453 + HP15_3560 0.36 +1.4 3,750,521 - HP15_3560 0.42 -0.2 3,750,543 + HP15_3560 0.44 +1.7 3,750,543 + HP15_3560 0.44 -0.7 3,750,543 + HP15_3560 0.44 +1.6 3,750,543 + HP15_3560 0.44 +0.0 3,750,703 + HP15_3560 0.58 +0.6 3,750,711 - HP15_3560 0.59 +1.2 3,750,899 + HP15_3560 0.75 -0.4 3,750,902 - HP15_3560 0.75 +2.5 3,750,930 + HP15_3560 0.78 +2.3 3,750,976 - HP15_3560 0.82 +0.6 3,751,062 - HP15_3560 0.89 +1.3 3,751,072 + +0.8 3,751,072 + -1.0 3,751,108 - +1.0 3,751,143 - +1.9 3,751,148 - +1.5 3,751,180 + +0.3 3,751,186 + +0.1 3,751,201 - +1.7 3,751,272 + -0.4 3,751,305 + -0.6 3,751,332 + +0.1 3,751,340 - -1.3 3,751,340 - +0.6 3,751,348 + -0.8 3,751,348 + +1.2 3,751,369 - -1.0 3,751,447 - HP15_3561 0.17 -0.1 3,751,569 + HP15_3561 0.35 -0.0 3,751,569 + HP15_3561 0.35 +1.6 3,751,596 + HP15_3561 0.39 -0.3 3,751,596 + HP15_3561 0.39 +1.8 3,751,604 - HP15_3561 0.40 +0.1 3,751,741 - HP15_3561 0.61 +0.9 3,751,756 - HP15_3561 0.63 +0.8 3,751,785 - HP15_3561 0.67 +1.7 3,751,813 - HP15_3561 0.71 +1.4 3,751,858 - HP15_3561 0.78 +1.3 3,751,909 + HP15_3561 0.86 -0.5 3,751,954 - +0.3 3,752,011 - +1.3 3,752,011 - +1.4 3,752,032 + +1.9 3,752,037 + +0.2 3,752,051 + +1.5 3,752,162 + +0.1 3,752,171 + -0.2 3,752,185 - -0.1
Or see this region's nucleotide sequence