Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3498 and HP15_3499 are separated by 87 nucleotides HP15_3499 and HP15_3500 are separated by 44 nucleotides HP15_3500 and HP15_3501 are separated by 22 nucleotides
HP15_3498: HP15_3498 - phosphoenolpyruvate carboxykinase (ATP), at 3,682,100 to 3,683,590
_3498
HP15_3499: HP15_3499 - conserved hypothetical protein, membrane, at 3,683,678 to 3,683,956
_3499
HP15_3500: HP15_3500 - conserved hypothetical protein, membrane, at 3,684,001 to 3,685,035
_3500
HP15_3501: HP15_3501 - integral membrane protein, possible transporter, at 3,685,058 to 3,687,121
_3501
Position (kb)
3684
3685
3686 Strain fitness (log2 ratio)
-1
0
1
2 at 3683.584 kb on + strand at 3683.659 kb on - strand at 3683.669 kb on - strand at 3683.745 kb on - strand, within HP15_3499 at 3683.766 kb on + strand, within HP15_3499 at 3684.084 kb on + strand at 3684.086 kb on + strand at 3684.125 kb on + strand, within HP15_3500 at 3684.200 kb on + strand, within HP15_3500 at 3684.208 kb on - strand, within HP15_3500 at 3684.208 kb on - strand, within HP15_3500 at 3684.215 kb on + strand, within HP15_3500 at 3684.229 kb on + strand, within HP15_3500 at 3684.232 kb on - strand, within HP15_3500 at 3684.234 kb on + strand, within HP15_3500 at 3684.237 kb on - strand, within HP15_3500 at 3684.237 kb on - strand, within HP15_3500 at 3684.242 kb on - strand, within HP15_3500 at 3684.386 kb on + strand, within HP15_3500 at 3684.416 kb on - strand, within HP15_3500 at 3684.436 kb on - strand, within HP15_3500 at 3684.448 kb on + strand, within HP15_3500 at 3684.453 kb on + strand, within HP15_3500 at 3684.461 kb on - strand, within HP15_3500 at 3684.703 kb on + strand, within HP15_3500 at 3684.705 kb on - strand, within HP15_3500 at 3684.716 kb on + strand, within HP15_3500 at 3684.860 kb on + strand, within HP15_3500 at 3684.885 kb on - strand, within HP15_3500 at 3685.029 kb on + strand at 3685.037 kb on - strand at 3685.228 kb on - strand at 3685.496 kb on + strand, within HP15_3501 at 3685.507 kb on - strand, within HP15_3501 at 3685.680 kb on + strand, within HP15_3501 at 3685.727 kb on + strand, within HP15_3501 at 3685.749 kb on + strand, within HP15_3501 at 3685.786 kb on - strand, within HP15_3501 at 3685.899 kb on - strand, within HP15_3501 at 3685.999 kb on - strand, within HP15_3501 at 3686.028 kb on + strand, within HP15_3501 at 3686.028 kb on + strand, within HP15_3501 at 3686.028 kb on + strand, within HP15_3501 at 3686.028 kb on + strand, within HP15_3501 at 3686.030 kb on + strand, within HP15_3501 at 3686.030 kb on + strand, within HP15_3501
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,683,584 + -0.1 3,683,659 - +0.3 3,683,669 - -0.3 3,683,745 - HP15_3499 0.24 -0.3 3,683,766 + HP15_3499 0.32 -0.2 3,684,084 + -0.9 3,684,086 + +1.2 3,684,125 + HP15_3500 0.12 +1.4 3,684,200 + HP15_3500 0.19 +2.5 3,684,208 - HP15_3500 0.20 -0.3 3,684,208 - HP15_3500 0.20 -0.1 3,684,215 + HP15_3500 0.21 +0.3 3,684,229 + HP15_3500 0.22 +0.2 3,684,232 - HP15_3500 0.22 -1.3 3,684,234 + HP15_3500 0.23 +1.7 3,684,237 - HP15_3500 0.23 +0.9 3,684,237 - HP15_3500 0.23 +0.3 3,684,242 - HP15_3500 0.23 +1.2 3,684,386 + HP15_3500 0.37 +1.6 3,684,416 - HP15_3500 0.40 +1.5 3,684,436 - HP15_3500 0.42 +0.3 3,684,448 + HP15_3500 0.43 -0.6 3,684,453 + HP15_3500 0.44 -0.7 3,684,461 - HP15_3500 0.44 -0.1 3,684,703 + HP15_3500 0.68 +0.0 3,684,705 - HP15_3500 0.68 +1.5 3,684,716 + HP15_3500 0.69 +0.6 3,684,860 + HP15_3500 0.83 -0.1 3,684,885 - HP15_3500 0.85 +1.8 3,685,029 + -0.3 3,685,037 - +0.5 3,685,228 - -0.1 3,685,496 + HP15_3501 0.21 -0.2 3,685,507 - HP15_3501 0.22 +0.5 3,685,680 + HP15_3501 0.30 +1.5 3,685,727 + HP15_3501 0.32 -1.0 3,685,749 + HP15_3501 0.33 +0.3 3,685,786 - HP15_3501 0.35 -0.9 3,685,899 - HP15_3501 0.41 -0.4 3,685,999 - HP15_3501 0.46 -1.1 3,686,028 + HP15_3501 0.47 +0.2 3,686,028 + HP15_3501 0.47 -0.4 3,686,028 + HP15_3501 0.47 +2.3 3,686,028 + HP15_3501 0.47 -0.6 3,686,030 + HP15_3501 0.47 -0.2 3,686,030 + HP15_3501 0.47 -0.0
Or see this region's nucleotide sequence