Strain Fitness in Marinobacter adhaerens HP15 around HP15_3433

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3431 and HP15_3432 are separated by 40 nucleotidesHP15_3432 and HP15_3433 are separated by 78 nucleotidesHP15_3433 and HP15_3434 are separated by 0 nucleotidesHP15_3434 and HP15_3435 are separated by 152 nucleotides HP15_3431: HP15_3431 - multi-sensor signal transduction histidine kinase, at 3,607,942 to 3,609,765 _3431 HP15_3432: HP15_3432 - bacterioferritin, at 3,609,806 to 3,610,345 _3432 HP15_3433: HP15_3433 - Aconitate hydratase (EC 4.2.1.3) (from data), at 3,610,424 to 3,613,183 _3433 HP15_3434: HP15_3434 - hypothetical protein, at 3,613,184 to 3,613,291 _3434 HP15_3435: HP15_3435 - methyl-accepting chemotaxis protein, at 3,613,444 to 3,614,964 _3435 Position (kb) 3610 3611 3612 3613 3614Strain fitness (log2 ratio) -1 0 1 2at 3609.438 kb on - strand, within HP15_3431at 3609.477 kb on + strand, within HP15_3431at 3609.547 kb on - strand, within HP15_3431at 3609.566 kb on - strand, within HP15_3431at 3609.604 kb on + strandat 3609.620 kb on + strandat 3609.645 kb on - strandat 3609.919 kb on + strand, within HP15_3432at 3610.127 kb on + strand, within HP15_3432at 3610.135 kb on - strand, within HP15_3432at 3610.262 kb on - strand, within HP15_3432at 3610.311 kb on - strandat 3610.349 kb on - strandat 3610.375 kb on + strandat 3610.429 kb on - strandat 3610.431 kb on + strandat 3610.473 kb on + strandat 3610.526 kb on + strandat 3610.539 kb on - strandat 3610.640 kb on + strandat 3610.693 kb on + strandat 3610.783 kb on + strand, within HP15_3433at 3610.798 kb on - strand, within HP15_3433at 3610.878 kb on - strand, within HP15_3433at 3610.958 kb on + strand, within HP15_3433at 3610.958 kb on + strand, within HP15_3433at 3610.966 kb on - strand, within HP15_3433at 3611.005 kb on - strand, within HP15_3433at 3611.165 kb on - strand, within HP15_3433at 3611.192 kb on - strand, within HP15_3433at 3611.213 kb on + strand, within HP15_3433at 3611.221 kb on - strand, within HP15_3433at 3611.221 kb on - strand, within HP15_3433at 3611.221 kb on - strand, within HP15_3433at 3611.407 kb on + strand, within HP15_3433at 3611.421 kb on + strand, within HP15_3433at 3611.588 kb on - strand, within HP15_3433at 3611.609 kb on + strand, within HP15_3433at 3611.650 kb on + strand, within HP15_3433at 3611.694 kb on - strand, within HP15_3433at 3611.715 kb on + strand, within HP15_3433at 3611.729 kb on + strand, within HP15_3433at 3611.729 kb on + strand, within HP15_3433at 3611.737 kb on - strand, within HP15_3433at 3611.759 kb on + strand, within HP15_3433at 3611.767 kb on - strand, within HP15_3433at 3611.805 kb on - strand, within HP15_3433at 3611.843 kb on - strand, within HP15_3433at 3611.954 kb on + strand, within HP15_3433at 3611.962 kb on - strand, within HP15_3433at 3611.974 kb on - strand, within HP15_3433at 3612.016 kb on + strand, within HP15_3433at 3612.029 kb on - strand, within HP15_3433at 3612.101 kb on - strand, within HP15_3433at 3612.136 kb on - strand, within HP15_3433at 3612.136 kb on - strand, within HP15_3433at 3612.136 kb on - strand, within HP15_3433at 3612.306 kb on + strand, within HP15_3433at 3612.314 kb on - strand, within HP15_3433at 3612.376 kb on - strand, within HP15_3433at 3612.376 kb on - strand, within HP15_3433at 3612.412 kb on + strand, within HP15_3433at 3612.421 kb on - strand, within HP15_3433at 3612.513 kb on - strand, within HP15_3433at 3612.528 kb on + strand, within HP15_3433at 3612.570 kb on + strand, within HP15_3433at 3612.571 kb on - strand, within HP15_3433at 3612.578 kb on + strand, within HP15_3433at 3612.600 kb on + strand, within HP15_3433at 3612.750 kb on - strand, within HP15_3433at 3612.783 kb on - strand, within HP15_3433at 3612.924 kb on + strandat 3612.932 kb on - strandat 3612.934 kb on + strandat 3612.986 kb on - strandat 3613.000 kb on + strandat 3613.089 kb on + strandat 3613.089 kb on + strandat 3613.097 kb on - strandat 3613.097 kb on - strandat 3613.298 kb on - strandat 3613.318 kb on + strandat 3613.326 kb on - strandat 3613.442 kb on + strandat 3613.442 kb on + strandat 3613.450 kb on - strandat 3613.450 kb on - strandat 3613.497 kb on + strandat 3613.497 kb on + strandat 3613.511 kb on + strandat 3613.511 kb on + strandat 3613.519 kb on - strandat 3613.643 kb on + strand, within HP15_3435at 3613.715 kb on + strand, within HP15_3435at 3613.728 kb on - strand, within HP15_3435at 3613.752 kb on + strand, within HP15_3435at 3613.811 kb on + strand, within HP15_3435at 3613.831 kb on + strand, within HP15_3435at 3613.834 kb on - strand, within HP15_3435at 3613.869 kb on - strand, within HP15_3435at 3613.874 kb on + strand, within HP15_3435at 3614.063 kb on + strand, within HP15_3435at 3614.177 kb on + strand, within HP15_3435

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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3,609,438 - HP15_3431 0.82 +0.8
3,609,477 + HP15_3431 0.84 +0.0
3,609,547 - HP15_3431 0.88 +1.5
3,609,566 - HP15_3431 0.89 -0.5
3,609,604 + -0.7
3,609,620 + -0.4
3,609,645 - -0.7
3,609,919 + HP15_3432 0.21 -0.5
3,610,127 + HP15_3432 0.59 +0.9
3,610,135 - HP15_3432 0.61 -0.1
3,610,262 - HP15_3432 0.84 +0.8
3,610,311 - -0.5
3,610,349 - +0.6
3,610,375 + -0.3
3,610,429 - -0.4
3,610,431 + -0.9
3,610,473 + +0.7
3,610,526 + +1.2
3,610,539 - -0.5
3,610,640 + +0.8
3,610,693 + +0.7
3,610,783 + HP15_3433 0.13 +0.5
3,610,798 - HP15_3433 0.14 +0.3
3,610,878 - HP15_3433 0.16 -0.1
3,610,958 + HP15_3433 0.19 +0.1
3,610,958 + HP15_3433 0.19 +1.7
3,610,966 - HP15_3433 0.20 +0.2
3,611,005 - HP15_3433 0.21 -1.6
3,611,165 - HP15_3433 0.27 -0.2
3,611,192 - HP15_3433 0.28 +2.1
3,611,213 + HP15_3433 0.29 +1.7
3,611,221 - HP15_3433 0.29 +1.1
3,611,221 - HP15_3433 0.29 +1.5
3,611,221 - HP15_3433 0.29 -0.6
3,611,407 + HP15_3433 0.36 +0.3
3,611,421 + HP15_3433 0.36 -0.8
3,611,588 - HP15_3433 0.42 -0.5
3,611,609 + HP15_3433 0.43 -0.3
3,611,650 + HP15_3433 0.44 -0.1
3,611,694 - HP15_3433 0.46 +1.4
3,611,715 + HP15_3433 0.47 -0.9
3,611,729 + HP15_3433 0.47 -0.9
3,611,729 + HP15_3433 0.47 +1.1
3,611,737 - HP15_3433 0.48 -0.2
3,611,759 + HP15_3433 0.48 +0.3
3,611,767 - HP15_3433 0.49 +0.2
3,611,805 - HP15_3433 0.50 +1.4
3,611,843 - HP15_3433 0.51 +0.5
3,611,954 + HP15_3433 0.55 +0.6
3,611,962 - HP15_3433 0.56 -0.5
3,611,974 - HP15_3433 0.56 +1.8
3,612,016 + HP15_3433 0.58 -0.5
3,612,029 - HP15_3433 0.58 +1.1
3,612,101 - HP15_3433 0.61 +1.1
3,612,136 - HP15_3433 0.62 +0.8
3,612,136 - HP15_3433 0.62 -0.7
3,612,136 - HP15_3433 0.62 +1.6
3,612,306 + HP15_3433 0.68 -0.9
3,612,314 - HP15_3433 0.68 -0.2
3,612,376 - HP15_3433 0.71 +0.5
3,612,376 - HP15_3433 0.71 +1.6
3,612,412 + HP15_3433 0.72 -1.3
3,612,421 - HP15_3433 0.72 -0.1
3,612,513 - HP15_3433 0.76 +1.6
3,612,528 + HP15_3433 0.76 -0.2
3,612,570 + HP15_3433 0.78 +0.3
3,612,571 - HP15_3433 0.78 +0.3
3,612,578 + HP15_3433 0.78 +0.3
3,612,600 + HP15_3433 0.79 -0.1
3,612,750 - HP15_3433 0.84 +1.6
3,612,783 - HP15_3433 0.85 +1.7
3,612,924 + -0.7
3,612,932 - +0.9
3,612,934 + +1.8
3,612,986 - +1.6
3,613,000 + +1.3
3,613,089 + -0.3
3,613,089 + +0.2
3,613,097 - +0.0
3,613,097 - +1.1
3,613,298 - +1.7
3,613,318 + -0.1
3,613,326 - -0.3
3,613,442 + -0.2
3,613,442 + +1.5
3,613,450 - -0.6
3,613,450 - +0.0
3,613,497 + -0.1
3,613,497 + -0.7
3,613,511 + +0.0
3,613,511 + +0.9
3,613,519 - -0.5
3,613,643 + HP15_3435 0.13 -0.5
3,613,715 + HP15_3435 0.18 -0.6
3,613,728 - HP15_3435 0.19 +1.7
3,613,752 + HP15_3435 0.20 +0.0
3,613,811 + HP15_3435 0.24 -1.3
3,613,831 + HP15_3435 0.25 -0.3
3,613,834 - HP15_3435 0.26 +1.5
3,613,869 - HP15_3435 0.28 +2.0
3,613,874 + HP15_3435 0.28 +1.0
3,614,063 + HP15_3435 0.41 -0.4
3,614,177 + HP15_3435 0.48 +0.3

Or see this region's nucleotide sequence