Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3431 and HP15_3432 are separated by 40 nucleotides HP15_3432 and HP15_3433 are separated by 78 nucleotides HP15_3433 and HP15_3434 are separated by 0 nucleotides HP15_3434 and HP15_3435 are separated by 152 nucleotides
HP15_3431: HP15_3431 - multi-sensor signal transduction histidine kinase, at 3,607,942 to 3,609,765
_3431
HP15_3432: HP15_3432 - bacterioferritin, at 3,609,806 to 3,610,345
_3432
HP15_3433: HP15_3433 - Aconitate hydratase (EC 4.2.1.3) (from data) , at 3,610,424 to 3,613,183
_3433
HP15_3434: HP15_3434 - hypothetical protein, at 3,613,184 to 3,613,291
_3434
HP15_3435: HP15_3435 - methyl-accepting chemotaxis protein, at 3,613,444 to 3,614,964
_3435
Position (kb)
3610
3611
3612
3613
3614 Strain fitness (log2 ratio)
-1
0
1
2 at 3609.438 kb on - strand, within HP15_3431 at 3609.477 kb on + strand, within HP15_3431 at 3609.547 kb on - strand, within HP15_3431 at 3609.566 kb on - strand, within HP15_3431 at 3609.604 kb on + strand at 3609.620 kb on + strand at 3609.645 kb on - strand at 3609.919 kb on + strand, within HP15_3432 at 3610.127 kb on + strand, within HP15_3432 at 3610.135 kb on - strand, within HP15_3432 at 3610.262 kb on - strand, within HP15_3432 at 3610.311 kb on - strand at 3610.349 kb on - strand at 3610.375 kb on + strand at 3610.429 kb on - strand at 3610.431 kb on + strand at 3610.473 kb on + strand at 3610.526 kb on + strand at 3610.539 kb on - strand at 3610.640 kb on + strand at 3610.693 kb on + strand at 3610.783 kb on + strand, within HP15_3433 at 3610.798 kb on - strand, within HP15_3433 at 3610.878 kb on - strand, within HP15_3433 at 3610.958 kb on + strand, within HP15_3433 at 3610.958 kb on + strand, within HP15_3433 at 3610.966 kb on - strand, within HP15_3433 at 3611.005 kb on - strand, within HP15_3433 at 3611.165 kb on - strand, within HP15_3433 at 3611.192 kb on - strand, within HP15_3433 at 3611.213 kb on + strand, within HP15_3433 at 3611.221 kb on - strand, within HP15_3433 at 3611.221 kb on - strand, within HP15_3433 at 3611.221 kb on - strand, within HP15_3433 at 3611.407 kb on + strand, within HP15_3433 at 3611.421 kb on + strand, within HP15_3433 at 3611.588 kb on - strand, within HP15_3433 at 3611.609 kb on + strand, within HP15_3433 at 3611.650 kb on + strand, within HP15_3433 at 3611.694 kb on - strand, within HP15_3433 at 3611.715 kb on + strand, within HP15_3433 at 3611.729 kb on + strand, within HP15_3433 at 3611.729 kb on + strand, within HP15_3433 at 3611.737 kb on - strand, within HP15_3433 at 3611.759 kb on + strand, within HP15_3433 at 3611.767 kb on - strand, within HP15_3433 at 3611.805 kb on - strand, within HP15_3433 at 3611.843 kb on - strand, within HP15_3433 at 3611.954 kb on + strand, within HP15_3433 at 3611.962 kb on - strand, within HP15_3433 at 3611.974 kb on - strand, within HP15_3433 at 3612.016 kb on + strand, within HP15_3433 at 3612.029 kb on - strand, within HP15_3433 at 3612.101 kb on - strand, within HP15_3433 at 3612.136 kb on - strand, within HP15_3433 at 3612.136 kb on - strand, within HP15_3433 at 3612.136 kb on - strand, within HP15_3433 at 3612.306 kb on + strand, within HP15_3433 at 3612.314 kb on - strand, within HP15_3433 at 3612.376 kb on - strand, within HP15_3433 at 3612.376 kb on - strand, within HP15_3433 at 3612.412 kb on + strand, within HP15_3433 at 3612.421 kb on - strand, within HP15_3433 at 3612.513 kb on - strand, within HP15_3433 at 3612.528 kb on + strand, within HP15_3433 at 3612.570 kb on + strand, within HP15_3433 at 3612.571 kb on - strand, within HP15_3433 at 3612.578 kb on + strand, within HP15_3433 at 3612.600 kb on + strand, within HP15_3433 at 3612.750 kb on - strand, within HP15_3433 at 3612.783 kb on - strand, within HP15_3433 at 3612.924 kb on + strand at 3612.932 kb on - strand at 3612.934 kb on + strand at 3612.986 kb on - strand at 3613.000 kb on + strand at 3613.089 kb on + strand at 3613.089 kb on + strand at 3613.097 kb on - strand at 3613.097 kb on - strand at 3613.298 kb on - strand at 3613.318 kb on + strand at 3613.326 kb on - strand at 3613.442 kb on + strand at 3613.442 kb on + strand at 3613.450 kb on - strand at 3613.450 kb on - strand at 3613.497 kb on + strand at 3613.497 kb on + strand at 3613.511 kb on + strand at 3613.511 kb on + strand at 3613.519 kb on - strand at 3613.643 kb on + strand, within HP15_3435 at 3613.715 kb on + strand, within HP15_3435 at 3613.728 kb on - strand, within HP15_3435 at 3613.752 kb on + strand, within HP15_3435 at 3613.811 kb on + strand, within HP15_3435 at 3613.831 kb on + strand, within HP15_3435 at 3613.834 kb on - strand, within HP15_3435 at 3613.869 kb on - strand, within HP15_3435 at 3613.874 kb on + strand, within HP15_3435 at 3614.063 kb on + strand, within HP15_3435 at 3614.177 kb on + strand, within HP15_3435
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,609,438 - HP15_3431 0.82 +0.8 3,609,477 + HP15_3431 0.84 +0.0 3,609,547 - HP15_3431 0.88 +1.5 3,609,566 - HP15_3431 0.89 -0.5 3,609,604 + -0.7 3,609,620 + -0.4 3,609,645 - -0.7 3,609,919 + HP15_3432 0.21 -0.5 3,610,127 + HP15_3432 0.59 +0.9 3,610,135 - HP15_3432 0.61 -0.1 3,610,262 - HP15_3432 0.84 +0.8 3,610,311 - -0.5 3,610,349 - +0.6 3,610,375 + -0.3 3,610,429 - -0.4 3,610,431 + -0.9 3,610,473 + +0.7 3,610,526 + +1.2 3,610,539 - -0.5 3,610,640 + +0.8 3,610,693 + +0.7 3,610,783 + HP15_3433 0.13 +0.5 3,610,798 - HP15_3433 0.14 +0.3 3,610,878 - HP15_3433 0.16 -0.1 3,610,958 + HP15_3433 0.19 +0.1 3,610,958 + HP15_3433 0.19 +1.7 3,610,966 - HP15_3433 0.20 +0.2 3,611,005 - HP15_3433 0.21 -1.6 3,611,165 - HP15_3433 0.27 -0.2 3,611,192 - HP15_3433 0.28 +2.1 3,611,213 + HP15_3433 0.29 +1.7 3,611,221 - HP15_3433 0.29 +1.1 3,611,221 - HP15_3433 0.29 +1.5 3,611,221 - HP15_3433 0.29 -0.6 3,611,407 + HP15_3433 0.36 +0.3 3,611,421 + HP15_3433 0.36 -0.8 3,611,588 - HP15_3433 0.42 -0.5 3,611,609 + HP15_3433 0.43 -0.3 3,611,650 + HP15_3433 0.44 -0.1 3,611,694 - HP15_3433 0.46 +1.4 3,611,715 + HP15_3433 0.47 -0.9 3,611,729 + HP15_3433 0.47 -0.9 3,611,729 + HP15_3433 0.47 +1.1 3,611,737 - HP15_3433 0.48 -0.2 3,611,759 + HP15_3433 0.48 +0.3 3,611,767 - HP15_3433 0.49 +0.2 3,611,805 - HP15_3433 0.50 +1.4 3,611,843 - HP15_3433 0.51 +0.5 3,611,954 + HP15_3433 0.55 +0.6 3,611,962 - HP15_3433 0.56 -0.5 3,611,974 - HP15_3433 0.56 +1.8 3,612,016 + HP15_3433 0.58 -0.5 3,612,029 - HP15_3433 0.58 +1.1 3,612,101 - HP15_3433 0.61 +1.1 3,612,136 - HP15_3433 0.62 +0.8 3,612,136 - HP15_3433 0.62 -0.7 3,612,136 - HP15_3433 0.62 +1.6 3,612,306 + HP15_3433 0.68 -0.9 3,612,314 - HP15_3433 0.68 -0.2 3,612,376 - HP15_3433 0.71 +0.5 3,612,376 - HP15_3433 0.71 +1.6 3,612,412 + HP15_3433 0.72 -1.3 3,612,421 - HP15_3433 0.72 -0.1 3,612,513 - HP15_3433 0.76 +1.6 3,612,528 + HP15_3433 0.76 -0.2 3,612,570 + HP15_3433 0.78 +0.3 3,612,571 - HP15_3433 0.78 +0.3 3,612,578 + HP15_3433 0.78 +0.3 3,612,600 + HP15_3433 0.79 -0.1 3,612,750 - HP15_3433 0.84 +1.6 3,612,783 - HP15_3433 0.85 +1.7 3,612,924 + -0.7 3,612,932 - +0.9 3,612,934 + +1.8 3,612,986 - +1.6 3,613,000 + +1.3 3,613,089 + -0.3 3,613,089 + +0.2 3,613,097 - +0.0 3,613,097 - +1.1 3,613,298 - +1.7 3,613,318 + -0.1 3,613,326 - -0.3 3,613,442 + -0.2 3,613,442 + +1.5 3,613,450 - -0.6 3,613,450 - +0.0 3,613,497 + -0.1 3,613,497 + -0.7 3,613,511 + +0.0 3,613,511 + +0.9 3,613,519 - -0.5 3,613,643 + HP15_3435 0.13 -0.5 3,613,715 + HP15_3435 0.18 -0.6 3,613,728 - HP15_3435 0.19 +1.7 3,613,752 + HP15_3435 0.20 +0.0 3,613,811 + HP15_3435 0.24 -1.3 3,613,831 + HP15_3435 0.25 -0.3 3,613,834 - HP15_3435 0.26 +1.5 3,613,869 - HP15_3435 0.28 +2.0 3,613,874 + HP15_3435 0.28 +1.0 3,614,063 + HP15_3435 0.41 -0.4 3,614,177 + HP15_3435 0.48 +0.3
Or see this region's nucleotide sequence