Strain Fitness in Marinobacter adhaerens HP15 around HP15_3360

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3358 and HP15_3359 are separated by 5 nucleotidesHP15_3359 and HP15_3360 are separated by 3 nucleotidesHP15_3360 and HP15_3361 are separated by 19 nucleotides HP15_3358: HP15_3358 - membrane-bound metal-dependent hydrolase, at 3,520,371 to 3,521,399 _3358 HP15_3359: HP15_3359 - pseudouridine synthase, Rsu, at 3,521,405 to 3,522,097 _3359 HP15_3360: HP15_3360 - asparaginase, at 3,522,101 to 3,522,580 _3360 HP15_3361: HP15_3361 - peptidase S11, D-alanyl-D-alanine carboxypeptidase 1, at 3,522,600 to 3,523,415 _3361 Position (kb) 3522 3523Strain fitness (log2 ratio) -2 -1 0 1 2at 3521.105 kb on - strand, within HP15_3358at 3521.395 kb on + strandat 3521.398 kb on - strandat 3521.403 kb on - strandat 3521.403 kb on - strandat 3521.453 kb on - strandat 3521.532 kb on + strand, within HP15_3359at 3521.561 kb on + strand, within HP15_3359at 3521.561 kb on + strand, within HP15_3359at 3521.561 kb on + strand, within HP15_3359at 3521.561 kb on + strand, within HP15_3359at 3521.569 kb on - strand, within HP15_3359at 3521.569 kb on - strand, within HP15_3359at 3521.570 kb on - strand, within HP15_3359at 3521.759 kb on - strand, within HP15_3359at 3521.785 kb on + strand, within HP15_3359at 3521.785 kb on + strand, within HP15_3359at 3521.816 kb on + strand, within HP15_3359at 3521.964 kb on - strand, within HP15_3359at 3522.030 kb on - strandat 3522.107 kb on - strandat 3522.179 kb on + strand, within HP15_3360at 3522.283 kb on - strand, within HP15_3360at 3522.313 kb on - strand, within HP15_3360at 3522.459 kb on - strand, within HP15_3360at 3522.534 kb on + strandat 3522.534 kb on + strandat 3522.541 kb on - strandat 3522.787 kb on - strand, within HP15_3361at 3523.071 kb on + strand, within HP15_3361at 3523.092 kb on - strand, within HP15_3361at 3523.150 kb on - strand, within HP15_3361at 3523.170 kb on + strand, within HP15_3361at 3523.192 kb on + strand, within HP15_3361at 3523.326 kb on - strand, within HP15_3361at 3523.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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3,521,105 - HP15_3358 0.71 +0.1
3,521,395 + +1.3
3,521,398 - -1.2
3,521,403 - +0.8
3,521,403 - -0.4
3,521,453 - -0.1
3,521,532 + HP15_3359 0.18 +1.3
3,521,561 + HP15_3359 0.23 -2.1
3,521,561 + HP15_3359 0.23 -2.6
3,521,561 + HP15_3359 0.23 -1.1
3,521,561 + HP15_3359 0.23 -0.6
3,521,569 - HP15_3359 0.24 +1.1
3,521,569 - HP15_3359 0.24 -0.5
3,521,570 - HP15_3359 0.24 +0.5
3,521,759 - HP15_3359 0.51 +1.7
3,521,785 + HP15_3359 0.55 +2.3
3,521,785 + HP15_3359 0.55 -0.4
3,521,816 + HP15_3359 0.59 -0.8
3,521,964 - HP15_3359 0.81 +0.4
3,522,030 - -0.5
3,522,107 - +1.0
3,522,179 + HP15_3360 0.16 +1.1
3,522,283 - HP15_3360 0.38 +0.4
3,522,313 - HP15_3360 0.44 -0.0
3,522,459 - HP15_3360 0.75 +1.4
3,522,534 + -0.1
3,522,534 + +1.4
3,522,541 - -0.6
3,522,787 - HP15_3361 0.23 +0.0
3,523,071 + HP15_3361 0.58 +0.3
3,523,092 - HP15_3361 0.60 +0.5
3,523,150 - HP15_3361 0.67 +0.1
3,523,170 + HP15_3361 0.70 +1.0
3,523,192 + HP15_3361 0.73 +1.2
3,523,326 - HP15_3361 0.89 +0.1
3,523,354 - +1.3

Or see this region's nucleotide sequence