Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3358 and HP15_3359 are separated by 5 nucleotides HP15_3359 and HP15_3360 are separated by 3 nucleotides HP15_3360 and HP15_3361 are separated by 19 nucleotides
HP15_3358: HP15_3358 - membrane-bound metal-dependent hydrolase, at 3,520,371 to 3,521,399
_3358
HP15_3359: HP15_3359 - pseudouridine synthase, Rsu, at 3,521,405 to 3,522,097
_3359
HP15_3360: HP15_3360 - asparaginase, at 3,522,101 to 3,522,580
_3360
HP15_3361: HP15_3361 - peptidase S11, D-alanyl-D-alanine carboxypeptidase 1, at 3,522,600 to 3,523,415
_3361
Position (kb)
3522
3523 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3521.105 kb on - strand, within HP15_3358 at 3521.395 kb on + strand at 3521.398 kb on - strand at 3521.403 kb on - strand at 3521.403 kb on - strand at 3521.453 kb on - strand at 3521.532 kb on + strand, within HP15_3359 at 3521.561 kb on + strand, within HP15_3359 at 3521.561 kb on + strand, within HP15_3359 at 3521.561 kb on + strand, within HP15_3359 at 3521.561 kb on + strand, within HP15_3359 at 3521.569 kb on - strand, within HP15_3359 at 3521.569 kb on - strand, within HP15_3359 at 3521.570 kb on - strand, within HP15_3359 at 3521.759 kb on - strand, within HP15_3359 at 3521.785 kb on + strand, within HP15_3359 at 3521.785 kb on + strand, within HP15_3359 at 3521.816 kb on + strand, within HP15_3359 at 3521.964 kb on - strand, within HP15_3359 at 3522.030 kb on - strand at 3522.107 kb on - strand at 3522.179 kb on + strand, within HP15_3360 at 3522.283 kb on - strand, within HP15_3360 at 3522.313 kb on - strand, within HP15_3360 at 3522.459 kb on - strand, within HP15_3360 at 3522.534 kb on + strand at 3522.534 kb on + strand at 3522.541 kb on - strand at 3522.787 kb on - strand, within HP15_3361 at 3523.071 kb on + strand, within HP15_3361 at 3523.092 kb on - strand, within HP15_3361 at 3523.150 kb on - strand, within HP15_3361 at 3523.170 kb on + strand, within HP15_3361 at 3523.192 kb on + strand, within HP15_3361 at 3523.326 kb on - strand, within HP15_3361 at 3523.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,521,105 - HP15_3358 0.71 +0.1 3,521,395 + +1.3 3,521,398 - -1.2 3,521,403 - +0.8 3,521,403 - -0.4 3,521,453 - -0.1 3,521,532 + HP15_3359 0.18 +1.3 3,521,561 + HP15_3359 0.23 -2.1 3,521,561 + HP15_3359 0.23 -2.6 3,521,561 + HP15_3359 0.23 -1.1 3,521,561 + HP15_3359 0.23 -0.6 3,521,569 - HP15_3359 0.24 +1.1 3,521,569 - HP15_3359 0.24 -0.5 3,521,570 - HP15_3359 0.24 +0.5 3,521,759 - HP15_3359 0.51 +1.7 3,521,785 + HP15_3359 0.55 +2.3 3,521,785 + HP15_3359 0.55 -0.4 3,521,816 + HP15_3359 0.59 -0.8 3,521,964 - HP15_3359 0.81 +0.4 3,522,030 - -0.5 3,522,107 - +1.0 3,522,179 + HP15_3360 0.16 +1.1 3,522,283 - HP15_3360 0.38 +0.4 3,522,313 - HP15_3360 0.44 -0.0 3,522,459 - HP15_3360 0.75 +1.4 3,522,534 + -0.1 3,522,534 + +1.4 3,522,541 - -0.6 3,522,787 - HP15_3361 0.23 +0.0 3,523,071 + HP15_3361 0.58 +0.3 3,523,092 - HP15_3361 0.60 +0.5 3,523,150 - HP15_3361 0.67 +0.1 3,523,170 + HP15_3361 0.70 +1.0 3,523,192 + HP15_3361 0.73 +1.2 3,523,326 - HP15_3361 0.89 +0.1 3,523,354 - +1.3
Or see this region's nucleotide sequence