Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3336 and HP15_3337 are separated by 157 nucleotides HP15_3337 and HP15_3338 are separated by 272 nucleotides HP15_3338 and HP15_3339 are separated by 2 nucleotides
HP15_3336: HP15_3336 - lipase chaperone, at 3,498,158 to 3,499,180
_3336
HP15_3337: HP15_3337 - delta-aminolevulinic acid dehydratase, at 3,499,338 to 3,499,559
_3337
HP15_3338: HP15_3338 - transcriptional regulator, TetR family, at 3,499,832 to 3,500,464
_3338
HP15_3339: HP15_3339 - acyl-CoA dehydrogenase domain protein, at 3,500,467 to 3,502,167
_3339
Position (kb)
3499
3500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3498.435 kb on - strand, within HP15_3336 at 3498.455 kb on - strand, within HP15_3336 at 3498.473 kb on - strand, within HP15_3336 at 3498.630 kb on - strand, within HP15_3336 at 3498.653 kb on - strand, within HP15_3336 at 3498.671 kb on + strand, within HP15_3336 at 3498.707 kb on + strand, within HP15_3336 at 3498.759 kb on - strand, within HP15_3336 at 3498.926 kb on - strand, within HP15_3336 at 3498.976 kb on - strand, within HP15_3336 at 3499.032 kb on + strand, within HP15_3336 at 3499.112 kb on - strand at 3499.142 kb on - strand at 3499.277 kb on + strand at 3499.327 kb on + strand at 3499.404 kb on - strand, within HP15_3337 at 3499.470 kb on - strand, within HP15_3337 at 3499.512 kb on + strand, within HP15_3337 at 3499.529 kb on + strand, within HP15_3337 at 3499.529 kb on + strand, within HP15_3337 at 3499.529 kb on + strand, within HP15_3337 at 3499.537 kb on - strand at 3499.537 kb on - strand at 3499.638 kb on - strand at 3499.899 kb on + strand, within HP15_3338 at 3500.001 kb on + strand, within HP15_3338 at 3500.007 kb on + strand, within HP15_3338 at 3500.072 kb on + strand, within HP15_3338 at 3500.080 kb on - strand, within HP15_3338 at 3500.086 kb on - strand, within HP15_3338 at 3500.229 kb on + strand, within HP15_3338 at 3500.297 kb on + strand, within HP15_3338 at 3500.305 kb on - strand, within HP15_3338
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,498,435 - HP15_3336 0.27 +0.2 3,498,455 - HP15_3336 0.29 +0.1 3,498,473 - HP15_3336 0.31 +0.5 3,498,630 - HP15_3336 0.46 -1.8 3,498,653 - HP15_3336 0.48 -1.4 3,498,671 + HP15_3336 0.50 +0.8 3,498,707 + HP15_3336 0.54 +1.3 3,498,759 - HP15_3336 0.59 -0.4 3,498,926 - HP15_3336 0.75 -0.0 3,498,976 - HP15_3336 0.80 -1.2 3,499,032 + HP15_3336 0.85 -0.8 3,499,112 - -0.1 3,499,142 - +1.5 3,499,277 + -0.9 3,499,327 + -0.3 3,499,404 - HP15_3337 0.30 +1.8 3,499,470 - HP15_3337 0.59 -1.5 3,499,512 + HP15_3337 0.78 -2.8 3,499,529 + HP15_3337 0.86 +1.0 3,499,529 + HP15_3337 0.86 -0.3 3,499,529 + HP15_3337 0.86 +0.2 3,499,537 - -0.2 3,499,537 - -0.1 3,499,638 - +0.1 3,499,899 + HP15_3338 0.11 -0.3 3,500,001 + HP15_3338 0.27 -0.2 3,500,007 + HP15_3338 0.28 -0.6 3,500,072 + HP15_3338 0.38 +1.6 3,500,080 - HP15_3338 0.39 -0.4 3,500,086 - HP15_3338 0.40 -0.2 3,500,229 + HP15_3338 0.63 +0.0 3,500,297 + HP15_3338 0.73 -0.8 3,500,305 - HP15_3338 0.75 -0.4
Or see this region's nucleotide sequence