Strain Fitness in Marinobacter adhaerens HP15 around HP15_3318

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3316 and HP15_3317 are separated by 24 nucleotidesHP15_3317 and HP15_3318 are separated by 57 nucleotidesHP15_3318 and HP15_3319 are separated by 95 nucleotidesHP15_3319 and HP15_3320 are separated by 41 nucleotides HP15_3316: HP15_3316 - acetylornithine deacetylase, at 3,476,407 to 3,477,657 _3316 HP15_3317: HP15_3317 - acetylglutamate kinase, at 3,477,682 to 3,478,578 _3317 HP15_3318: HP15_3318 - phosphomannomutase, at 3,478,636 to 3,481,278 _3318 HP15_3319: HP15_3319 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut, at 3,481,374 to 3,481,835 _3319 HP15_3320: HP15_3320 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase, at 3,481,877 to 3,483,076 _3320 Position (kb) 3478 3479 3480 3481 3482Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3477.796 kb on + strand, within HP15_3317at 3478.281 kb on - strand, within HP15_3317at 3478.567 kb on + strandat 3478.691 kb on + strandat 3478.743 kb on + strandat 3478.756 kb on - strandat 3478.855 kb on + strandat 3479.272 kb on + strand, within HP15_3318at 3479.414 kb on + strand, within HP15_3318at 3479.448 kb on - strand, within HP15_3318at 3479.465 kb on - strand, within HP15_3318at 3479.504 kb on + strand, within HP15_3318at 3479.505 kb on + strand, within HP15_3318at 3479.512 kb on - strand, within HP15_3318at 3479.638 kb on + strand, within HP15_3318at 3479.723 kb on - strand, within HP15_3318at 3479.777 kb on + strand, within HP15_3318at 3479.806 kb on + strand, within HP15_3318at 3479.808 kb on + strand, within HP15_3318at 3479.860 kb on + strand, within HP15_3318at 3479.868 kb on - strand, within HP15_3318at 3480.090 kb on - strand, within HP15_3318at 3480.122 kb on + strand, within HP15_3318at 3480.257 kb on + strand, within HP15_3318at 3480.317 kb on - strand, within HP15_3318at 3480.324 kb on - strand, within HP15_3318at 3480.389 kb on + strand, within HP15_3318at 3480.499 kb on - strand, within HP15_3318at 3480.501 kb on - strand, within HP15_3318at 3480.501 kb on - strand, within HP15_3318at 3480.502 kb on - strand, within HP15_3318at 3480.506 kb on + strand, within HP15_3318at 3480.514 kb on - strand, within HP15_3318at 3480.593 kb on + strand, within HP15_3318at 3480.593 kb on + strand, within HP15_3318at 3480.601 kb on - strand, within HP15_3318at 3480.647 kb on + strand, within HP15_3318at 3480.793 kb on - strand, within HP15_3318at 3480.964 kb on + strand, within HP15_3318at 3480.991 kb on + strand, within HP15_3318at 3481.188 kb on + strandat 3481.280 kb on - strandat 3481.340 kb on - strandat 3481.340 kb on - strandat 3481.340 kb on - strandat 3481.340 kb on - strandat 3481.351 kb on + strandat 3481.841 kb on - strandat 3481.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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3,477,796 + HP15_3317 0.13 -2.4
3,478,281 - HP15_3317 0.67 -1.4
3,478,567 + -2.9
3,478,691 + -1.8
3,478,743 + -3.3
3,478,756 - +1.4
3,478,855 + +0.9
3,479,272 + HP15_3318 0.24 -0.1
3,479,414 + HP15_3318 0.29 +1.9
3,479,448 - HP15_3318 0.31 -0.8
3,479,465 - HP15_3318 0.31 -0.3
3,479,504 + HP15_3318 0.33 -0.8
3,479,505 + HP15_3318 0.33 -0.1
3,479,512 - HP15_3318 0.33 +0.2
3,479,638 + HP15_3318 0.38 +1.3
3,479,723 - HP15_3318 0.41 -1.1
3,479,777 + HP15_3318 0.43 -1.3
3,479,806 + HP15_3318 0.44 -0.7
3,479,808 + HP15_3318 0.44 -1.4
3,479,860 + HP15_3318 0.46 +0.2
3,479,868 - HP15_3318 0.47 +0.0
3,480,090 - HP15_3318 0.55 +1.3
3,480,122 + HP15_3318 0.56 -0.3
3,480,257 + HP15_3318 0.61 +2.0
3,480,317 - HP15_3318 0.64 +0.1
3,480,324 - HP15_3318 0.64 +1.4
3,480,389 + HP15_3318 0.66 -1.1
3,480,499 - HP15_3318 0.70 +2.0
3,480,501 - HP15_3318 0.71 +1.6
3,480,501 - HP15_3318 0.71 +1.6
3,480,502 - HP15_3318 0.71 -1.4
3,480,506 + HP15_3318 0.71 +1.4
3,480,514 - HP15_3318 0.71 -0.8
3,480,593 + HP15_3318 0.74 -0.4
3,480,593 + HP15_3318 0.74 -1.4
3,480,601 - HP15_3318 0.74 +1.8
3,480,647 + HP15_3318 0.76 -0.4
3,480,793 - HP15_3318 0.82 -0.3
3,480,964 + HP15_3318 0.88 -0.7
3,480,991 + HP15_3318 0.89 -0.3
3,481,188 + -0.5
3,481,280 - +0.2
3,481,340 - +0.8
3,481,340 - +0.2
3,481,340 - -0.2
3,481,340 - +2.8
3,481,351 + +1.8
3,481,841 - -0.9
3,481,849 - +2.0

Or see this region's nucleotide sequence