Strain Fitness in Marinobacter adhaerens HP15 around HP15_3043

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3042 and HP15_3043 are separated by 99 nucleotidesHP15_3043 and HP15_3044 are separated by 162 nucleotides HP15_3042: HP15_3042 - acetylornithine aminotransferase (EC 2.6.1.11); succinylornithine aminotransferase (EC 2.6.1.81) (from data), at 3,188,964 to 3,190,178 _3042 HP15_3043: HP15_3043 - DNA polymerase III, epsilon subunit, at 3,190,278 to 3,191,738 _3043 HP15_3044: HP15_3044 - conserved hypothetical protein, secreted, at 3,191,901 to 3,193,034 _3044 Position (kb) 3190 3191 3192Strain fitness (log2 ratio) -1 0 1 2 3at 3189.312 kb on - strand, within HP15_3042at 3189.350 kb on + strand, within HP15_3042at 3189.370 kb on - strand, within HP15_3042at 3189.463 kb on + strand, within HP15_3042at 3189.463 kb on + strand, within HP15_3042at 3189.471 kb on - strand, within HP15_3042at 3189.518 kb on - strand, within HP15_3042at 3189.583 kb on - strand, within HP15_3042at 3189.583 kb on - strand, within HP15_3042at 3189.586 kb on + strand, within HP15_3042at 3189.596 kb on + strand, within HP15_3042at 3189.902 kb on - strand, within HP15_3042at 3190.023 kb on + strand, within HP15_3042at 3190.023 kb on + strand, within HP15_3042at 3190.264 kb on - strandat 3190.389 kb on + strandat 3190.543 kb on - strand, within HP15_3043at 3190.630 kb on + strand, within HP15_3043at 3190.630 kb on + strand, within HP15_3043at 3190.638 kb on - strand, within HP15_3043at 3190.640 kb on + strand, within HP15_3043at 3190.829 kb on - strand, within HP15_3043at 3190.887 kb on + strand, within HP15_3043at 3190.914 kb on - strand, within HP15_3043at 3190.924 kb on - strand, within HP15_3043at 3190.964 kb on + strand, within HP15_3043at 3190.972 kb on - strand, within HP15_3043at 3190.991 kb on + strand, within HP15_3043at 3190.991 kb on + strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3191.008 kb on + strand, within HP15_3043at 3191.010 kb on + strand, within HP15_3043at 3191.018 kb on - strand, within HP15_3043at 3191.045 kb on + strand, within HP15_3043at 3191.116 kb on - strand, within HP15_3043at 3191.116 kb on - strand, within HP15_3043at 3191.124 kb on - strand, within HP15_3043at 3191.134 kb on + strand, within HP15_3043at 3191.293 kb on + strand, within HP15_3043at 3191.360 kb on + strand, within HP15_3043at 3191.466 kb on + strand, within HP15_3043at 3191.467 kb on + strand, within HP15_3043at 3191.475 kb on - strand, within HP15_3043at 3191.475 kb on - strand, within HP15_3043at 3191.623 kb on + strandat 3191.679 kb on + strandat 3191.988 kb on - strandat 3191.990 kb on + strandat 3191.998 kb on - strandat 3192.024 kb on + strand, within HP15_3044at 3192.041 kb on - strand, within HP15_3044at 3192.041 kb on - strand, within HP15_3044at 3192.327 kb on + strand, within HP15_3044at 3192.469 kb on + strand, within HP15_3044at 3192.470 kb on - strand, within HP15_3044at 3192.477 kb on - strand, within HP15_3044at 3192.477 kb on - strand, within HP15_3044at 3192.477 kb on - strand, within HP15_3044at 3192.478 kb on - strand, within HP15_3044at 3192.518 kb on + strand, within HP15_3044at 3192.605 kb on - strand, within HP15_3044at 3192.661 kb on - strand, within HP15_3044

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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3,189,312 - HP15_3042 0.29 -1.3
3,189,350 + HP15_3042 0.32 -0.8
3,189,370 - HP15_3042 0.33 +2.0
3,189,463 + HP15_3042 0.41 +1.4
3,189,463 + HP15_3042 0.41 -0.3
3,189,471 - HP15_3042 0.42 -0.7
3,189,518 - HP15_3042 0.46 -0.4
3,189,583 - HP15_3042 0.51 +1.6
3,189,583 - HP15_3042 0.51 -0.2
3,189,586 + HP15_3042 0.51 +0.2
3,189,596 + HP15_3042 0.52 -0.3
3,189,902 - HP15_3042 0.77 -0.5
3,190,023 + HP15_3042 0.87 -0.3
3,190,023 + HP15_3042 0.87 +2.5
3,190,264 - +0.3
3,190,389 + +0.2
3,190,543 - HP15_3043 0.18 +3.5
3,190,630 + HP15_3043 0.24 +0.2
3,190,630 + HP15_3043 0.24 +1.7
3,190,638 - HP15_3043 0.25 +1.4
3,190,640 + HP15_3043 0.25 +0.0
3,190,829 - HP15_3043 0.38 -0.1
3,190,887 + HP15_3043 0.42 +1.8
3,190,914 - HP15_3043 0.44 -0.3
3,190,924 - HP15_3043 0.44 +0.3
3,190,964 + HP15_3043 0.47 -0.4
3,190,972 - HP15_3043 0.48 +2.1
3,190,991 + HP15_3043 0.49 -0.6
3,190,991 + HP15_3043 0.49 -1.7
3,190,999 - HP15_3043 0.49 -0.7
3,190,999 - HP15_3043 0.49 +1.4
3,190,999 - HP15_3043 0.49 +0.6
3,190,999 - HP15_3043 0.49 +1.9
3,190,999 - HP15_3043 0.49 +0.2
3,191,008 + HP15_3043 0.50 +1.8
3,191,010 + HP15_3043 0.50 +1.4
3,191,018 - HP15_3043 0.51 +0.4
3,191,045 + HP15_3043 0.52 -0.0
3,191,116 - HP15_3043 0.57 +1.7
3,191,116 - HP15_3043 0.57 +0.2
3,191,124 - HP15_3043 0.58 +1.5
3,191,134 + HP15_3043 0.59 +1.2
3,191,293 + HP15_3043 0.69 +0.2
3,191,360 + HP15_3043 0.74 +0.1
3,191,466 + HP15_3043 0.81 +1.5
3,191,467 + HP15_3043 0.81 +1.6
3,191,475 - HP15_3043 0.82 -0.3
3,191,475 - HP15_3043 0.82 -0.3
3,191,623 + +0.4
3,191,679 + -0.1
3,191,988 - -0.5
3,191,990 + -0.3
3,191,998 - -0.8
3,192,024 + HP15_3044 0.11 -0.3
3,192,041 - HP15_3044 0.12 +0.3
3,192,041 - HP15_3044 0.12 +1.6
3,192,327 + HP15_3044 0.38 -1.4
3,192,469 + HP15_3044 0.50 +1.7
3,192,470 - HP15_3044 0.50 +1.3
3,192,477 - HP15_3044 0.51 +1.6
3,192,477 - HP15_3044 0.51 +0.2
3,192,477 - HP15_3044 0.51 +2.1
3,192,478 - HP15_3044 0.51 -1.0
3,192,518 + HP15_3044 0.54 -0.8
3,192,605 - HP15_3044 0.62 +2.4
3,192,661 - HP15_3044 0.67 +1.1

Or see this region's nucleotide sequence