Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2894 and HP15_2895 are separated by 65 nucleotides HP15_2895 and HP15_2896 overlap by 4 nucleotides
HP15_2894: HP15_2894 - conserved hypothetical protein, at 3,029,454 to 3,030,419
_2894
HP15_2895: HP15_2895 - integral membrane protein, at 3,030,485 to 3,031,543
_2895
HP15_2896: HP15_2896 - glycosyltransferase, at 3,031,540 to 3,033,783
_2896
Position (kb)
3030
3031
3032 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3029.575 kb on - strand, within HP15_2894 at 3029.637 kb on - strand, within HP15_2894 at 3029.639 kb on + strand, within HP15_2894 at 3029.667 kb on - strand, within HP15_2894 at 3029.761 kb on + strand, within HP15_2894 at 3029.769 kb on - strand, within HP15_2894 at 3029.913 kb on - strand, within HP15_2894 at 3029.916 kb on + strand, within HP15_2894 at 3029.963 kb on + strand, within HP15_2894 at 3029.963 kb on + strand, within HP15_2894 at 3030.067 kb on + strand, within HP15_2894 at 3030.075 kb on - strand, within HP15_2894 at 3030.075 kb on - strand, within HP15_2894 at 3030.111 kb on + strand, within HP15_2894 at 3030.119 kb on - strand, within HP15_2894 at 3030.146 kb on + strand, within HP15_2894 at 3030.166 kb on + strand, within HP15_2894 at 3030.235 kb on - strand, within HP15_2894 at 3030.270 kb on - strand, within HP15_2894 at 3030.436 kb on + strand at 3030.442 kb on + strand at 3030.442 kb on + strand at 3030.442 kb on + strand at 3030.443 kb on + strand at 3030.444 kb on - strand at 3030.449 kb on - strand at 3030.450 kb on - strand at 3030.481 kb on + strand at 3030.481 kb on + strand at 3030.481 kb on + strand at 3030.486 kb on + strand at 3030.580 kb on + strand at 3030.699 kb on + strand, within HP15_2895 at 3030.733 kb on - strand, within HP15_2895 at 3030.829 kb on + strand, within HP15_2895 at 3030.954 kb on - strand, within HP15_2895 at 3031.273 kb on + strand, within HP15_2895 at 3031.284 kb on + strand, within HP15_2895 at 3031.292 kb on - strand, within HP15_2895 at 3031.292 kb on - strand, within HP15_2895 at 3031.322 kb on - strand, within HP15_2895 at 3031.774 kb on - strand, within HP15_2896 at 3031.845 kb on - strand, within HP15_2896 at 3031.957 kb on + strand, within HP15_2896 at 3032.059 kb on + strand, within HP15_2896 at 3032.067 kb on - strand, within HP15_2896 at 3032.086 kb on - strand, within HP15_2896 at 3032.211 kb on - strand, within HP15_2896 at 3032.307 kb on - strand, within HP15_2896 at 3032.381 kb on + strand, within HP15_2896 at 3032.389 kb on - strand, within HP15_2896 at 3032.456 kb on - strand, within HP15_2896 at 3032.456 kb on - strand, within HP15_2896 at 3032.456 kb on - strand, within HP15_2896
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,029,575 - HP15_2894 0.13 +1.0 3,029,637 - HP15_2894 0.19 +0.0 3,029,639 + HP15_2894 0.19 +1.1 3,029,667 - HP15_2894 0.22 -0.5 3,029,761 + HP15_2894 0.32 +0.0 3,029,769 - HP15_2894 0.33 -0.7 3,029,913 - HP15_2894 0.48 +0.4 3,029,916 + HP15_2894 0.48 -0.9 3,029,963 + HP15_2894 0.53 -0.1 3,029,963 + HP15_2894 0.53 -0.4 3,030,067 + HP15_2894 0.63 +1.6 3,030,075 - HP15_2894 0.64 +1.2 3,030,075 - HP15_2894 0.64 +0.9 3,030,111 + HP15_2894 0.68 -0.3 3,030,119 - HP15_2894 0.69 -1.6 3,030,146 + HP15_2894 0.72 -1.1 3,030,166 + HP15_2894 0.74 -1.0 3,030,235 - HP15_2894 0.81 -0.8 3,030,270 - HP15_2894 0.84 -2.1 3,030,436 + +0.5 3,030,442 + -1.8 3,030,442 + -0.4 3,030,442 + +0.1 3,030,443 + -0.3 3,030,444 - -0.5 3,030,449 - +1.4 3,030,450 - +0.4 3,030,481 + -0.2 3,030,481 + -0.5 3,030,481 + -0.3 3,030,486 + -1.0 3,030,580 + -0.3 3,030,699 + HP15_2895 0.20 +0.9 3,030,733 - HP15_2895 0.23 -0.6 3,030,829 + HP15_2895 0.32 -0.1 3,030,954 - HP15_2895 0.44 -1.4 3,031,273 + HP15_2895 0.74 -0.5 3,031,284 + HP15_2895 0.75 -1.3 3,031,292 - HP15_2895 0.76 -0.8 3,031,292 - HP15_2895 0.76 +0.0 3,031,322 - HP15_2895 0.79 -0.8 3,031,774 - HP15_2896 0.10 +2.8 3,031,845 - HP15_2896 0.14 +0.9 3,031,957 + HP15_2896 0.19 -0.7 3,032,059 + HP15_2896 0.23 +1.5 3,032,067 - HP15_2896 0.23 -0.2 3,032,086 - HP15_2896 0.24 +0.1 3,032,211 - HP15_2896 0.30 +0.1 3,032,307 - HP15_2896 0.34 -1.9 3,032,381 + HP15_2896 0.37 +2.4 3,032,389 - HP15_2896 0.38 +0.1 3,032,456 - HP15_2896 0.41 -0.5 3,032,456 - HP15_2896 0.41 +0.1 3,032,456 - HP15_2896 0.41 +1.2
Or see this region's nucleotide sequence