Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2893 and HP15_2894 are separated by 252 nucleotides HP15_2894 and HP15_2895 are separated by 65 nucleotides
HP15_2893: HP15_2893 - transcriptional regulator, GntR family, at 3,028,542 to 3,029,201
_2893
HP15_2894: HP15_2894 - conserved hypothetical protein, at 3,029,454 to 3,030,419
_2894
HP15_2895: HP15_2895 - integral membrane protein, at 3,030,485 to 3,031,543
_2895
Position (kb)
3029
3030
3031 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3028.454 kb on - strand at 3028.464 kb on - strand at 3028.486 kb on - strand at 3028.517 kb on + strand at 3028.601 kb on + strand at 3028.685 kb on + strand, within HP15_2893 at 3028.692 kb on + strand, within HP15_2893 at 3028.700 kb on - strand, within HP15_2893 at 3028.700 kb on - strand, within HP15_2893 at 3028.700 kb on - strand, within HP15_2893 at 3028.700 kb on - strand, within HP15_2893 at 3028.702 kb on + strand, within HP15_2893 at 3028.702 kb on + strand, within HP15_2893 at 3028.710 kb on - strand, within HP15_2893 at 3028.736 kb on + strand, within HP15_2893 at 3028.792 kb on - strand, within HP15_2893 at 3028.868 kb on - strand, within HP15_2893 at 3028.893 kb on - strand, within HP15_2893 at 3028.895 kb on - strand, within HP15_2893 at 3028.895 kb on - strand, within HP15_2893 at 3028.895 kb on - strand, within HP15_2893 at 3028.929 kb on - strand, within HP15_2893 at 3028.971 kb on - strand, within HP15_2893 at 3029.065 kb on + strand, within HP15_2893 at 3029.109 kb on + strand, within HP15_2893 at 3029.194 kb on - strand at 3029.238 kb on + strand at 3029.354 kb on - strand at 3029.356 kb on - strand at 3029.383 kb on + strand at 3029.418 kb on + strand at 3029.442 kb on + strand at 3029.575 kb on - strand, within HP15_2894 at 3029.637 kb on - strand, within HP15_2894 at 3029.639 kb on + strand, within HP15_2894 at 3029.667 kb on - strand, within HP15_2894 at 3029.761 kb on + strand, within HP15_2894 at 3029.769 kb on - strand, within HP15_2894 at 3029.913 kb on - strand, within HP15_2894 at 3029.916 kb on + strand, within HP15_2894 at 3029.963 kb on + strand, within HP15_2894 at 3029.963 kb on + strand, within HP15_2894 at 3030.067 kb on + strand, within HP15_2894 at 3030.075 kb on - strand, within HP15_2894 at 3030.075 kb on - strand, within HP15_2894 at 3030.111 kb on + strand, within HP15_2894 at 3030.119 kb on - strand, within HP15_2894 at 3030.146 kb on + strand, within HP15_2894 at 3030.166 kb on + strand, within HP15_2894 at 3030.235 kb on - strand, within HP15_2894 at 3030.270 kb on - strand, within HP15_2894 at 3030.436 kb on + strand at 3030.442 kb on + strand at 3030.442 kb on + strand at 3030.442 kb on + strand at 3030.443 kb on + strand at 3030.444 kb on - strand at 3030.449 kb on - strand at 3030.450 kb on - strand at 3030.481 kb on + strand at 3030.481 kb on + strand at 3030.481 kb on + strand at 3030.486 kb on + strand at 3030.580 kb on + strand at 3030.699 kb on + strand, within HP15_2895 at 3030.733 kb on - strand, within HP15_2895 at 3030.829 kb on + strand, within HP15_2895 at 3030.954 kb on - strand, within HP15_2895 at 3031.273 kb on + strand, within HP15_2895 at 3031.284 kb on + strand, within HP15_2895 at 3031.292 kb on - strand, within HP15_2895 at 3031.292 kb on - strand, within HP15_2895 at 3031.322 kb on - strand, within HP15_2895
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 3,028,454 - +0.0 3,028,464 - +1.5 3,028,486 - -0.0 3,028,517 + +1.1 3,028,601 + -1.0 3,028,685 + HP15_2893 0.22 -1.1 3,028,692 + HP15_2893 0.23 +1.4 3,028,700 - HP15_2893 0.24 -1.0 3,028,700 - HP15_2893 0.24 -0.3 3,028,700 - HP15_2893 0.24 +0.0 3,028,700 - HP15_2893 0.24 -1.8 3,028,702 + HP15_2893 0.24 +0.5 3,028,702 + HP15_2893 0.24 +0.1 3,028,710 - HP15_2893 0.25 +1.5 3,028,736 + HP15_2893 0.29 +0.9 3,028,792 - HP15_2893 0.38 +2.4 3,028,868 - HP15_2893 0.49 -0.6 3,028,893 - HP15_2893 0.53 +0.4 3,028,895 - HP15_2893 0.53 -0.4 3,028,895 - HP15_2893 0.53 -0.2 3,028,895 - HP15_2893 0.53 +0.2 3,028,929 - HP15_2893 0.59 -2.5 3,028,971 - HP15_2893 0.65 -0.3 3,029,065 + HP15_2893 0.79 +1.9 3,029,109 + HP15_2893 0.86 +0.2 3,029,194 - +1.3 3,029,238 + +0.9 3,029,354 - +0.4 3,029,356 - +3.0 3,029,383 + +1.7 3,029,418 + -0.5 3,029,442 + -0.4 3,029,575 - HP15_2894 0.13 +1.0 3,029,637 - HP15_2894 0.19 +0.0 3,029,639 + HP15_2894 0.19 +1.1 3,029,667 - HP15_2894 0.22 -0.5 3,029,761 + HP15_2894 0.32 +0.0 3,029,769 - HP15_2894 0.33 -0.7 3,029,913 - HP15_2894 0.48 +0.4 3,029,916 + HP15_2894 0.48 -0.9 3,029,963 + HP15_2894 0.53 -0.1 3,029,963 + HP15_2894 0.53 -0.4 3,030,067 + HP15_2894 0.63 +1.6 3,030,075 - HP15_2894 0.64 +1.2 3,030,075 - HP15_2894 0.64 +0.9 3,030,111 + HP15_2894 0.68 -0.3 3,030,119 - HP15_2894 0.69 -1.6 3,030,146 + HP15_2894 0.72 -1.1 3,030,166 + HP15_2894 0.74 -1.0 3,030,235 - HP15_2894 0.81 -0.8 3,030,270 - HP15_2894 0.84 -2.1 3,030,436 + +0.5 3,030,442 + -1.8 3,030,442 + -0.4 3,030,442 + +0.1 3,030,443 + -0.3 3,030,444 - -0.5 3,030,449 - +1.4 3,030,450 - +0.4 3,030,481 + -0.2 3,030,481 + -0.5 3,030,481 + -0.3 3,030,486 + -1.0 3,030,580 + -0.3 3,030,699 + HP15_2895 0.20 +0.9 3,030,733 - HP15_2895 0.23 -0.6 3,030,829 + HP15_2895 0.32 -0.1 3,030,954 - HP15_2895 0.44 -1.4 3,031,273 + HP15_2895 0.74 -0.5 3,031,284 + HP15_2895 0.75 -1.3 3,031,292 - HP15_2895 0.76 -0.8 3,031,292 - HP15_2895 0.76 +0.0 3,031,322 - HP15_2895 0.79 -0.8
Or see this region's nucleotide sequence