Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2752 and HP15_2753 are separated by 68 nucleotides HP15_2753 and HP15_2754 are separated by 227 nucleotides HP15_2754 and HP15_2755 overlap by 4 nucleotides
HP15_2752: HP15_2752 - glutathione-regulated potassium-efflux system protein kefC, at 2,906,092 to 2,907,975
_2752
HP15_2753: HP15_2753 - transcriptional regulator protein, LysR family, at 2,908,044 to 2,908,904
_2753
HP15_2754: HP15_2754 - conserved hypothetical protein, at 2,909,132 to 2,909,371
_2754
HP15_2755: HP15_2755 - homocysteine S-methyltransferase family protein, at 2,909,368 to 2,910,273
_2755
Position (kb)
2908
2909 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2907.055 kb on - strand, within HP15_2752 at 2907.060 kb on + strand, within HP15_2752 at 2907.125 kb on + strand, within HP15_2752 at 2907.170 kb on + strand, within HP15_2752 at 2907.232 kb on + strand, within HP15_2752 at 2907.240 kb on - strand, within HP15_2752 at 2907.282 kb on - strand, within HP15_2752 at 2907.376 kb on - strand, within HP15_2752 at 2907.440 kb on - strand, within HP15_2752 at 2907.452 kb on + strand, within HP15_2752 at 2907.533 kb on - strand, within HP15_2752 at 2907.559 kb on + strand, within HP15_2752 at 2907.624 kb on - strand, within HP15_2752 at 2907.640 kb on + strand, within HP15_2752 at 2907.654 kb on - strand, within HP15_2752 at 2907.671 kb on + strand, within HP15_2752 at 2907.699 kb on + strand, within HP15_2752 at 2907.826 kb on - strand at 2907.893 kb on - strand at 2907.916 kb on + strand at 2907.924 kb on - strand at 2908.099 kb on - strand at 2908.108 kb on - strand at 2908.226 kb on + strand, within HP15_2753 at 2908.246 kb on + strand, within HP15_2753 at 2908.260 kb on + strand, within HP15_2753 at 2908.272 kb on + strand, within HP15_2753 at 2908.296 kb on - strand, within HP15_2753 at 2908.426 kb on - strand, within HP15_2753 at 2908.464 kb on + strand, within HP15_2753 at 2908.472 kb on - strand, within HP15_2753 at 2908.473 kb on - strand, within HP15_2753 at 2908.473 kb on - strand, within HP15_2753 at 2908.796 kb on + strand, within HP15_2753 at 2908.877 kb on + strand at 2909.159 kb on - strand, within HP15_2754 at 2909.338 kb on + strand, within HP15_2754 at 2909.622 kb on + strand, within HP15_2755 at 2909.622 kb on + strand, within HP15_2755 at 2909.623 kb on - strand, within HP15_2755 at 2909.734 kb on + strand, within HP15_2755 at 2909.747 kb on - strand, within HP15_2755 at 2909.791 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.883 kb on - strand, within HP15_2755
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 2,907,055 - HP15_2752 0.51 -0.6 2,907,060 + HP15_2752 0.51 -0.5 2,907,125 + HP15_2752 0.55 +1.8 2,907,170 + HP15_2752 0.57 -0.0 2,907,232 + HP15_2752 0.61 -1.5 2,907,240 - HP15_2752 0.61 +0.9 2,907,282 - HP15_2752 0.63 -0.1 2,907,376 - HP15_2752 0.68 -0.7 2,907,440 - HP15_2752 0.72 +0.8 2,907,452 + HP15_2752 0.72 -0.0 2,907,533 - HP15_2752 0.76 -0.0 2,907,559 + HP15_2752 0.78 +1.0 2,907,624 - HP15_2752 0.81 -0.8 2,907,640 + HP15_2752 0.82 -0.8 2,907,654 - HP15_2752 0.83 +1.3 2,907,671 + HP15_2752 0.84 -0.0 2,907,699 + HP15_2752 0.85 -0.6 2,907,826 - +1.0 2,907,893 - -0.0 2,907,916 + -0.3 2,907,924 - +0.4 2,908,099 - +2.2 2,908,108 - +2.0 2,908,226 + HP15_2753 0.21 +0.3 2,908,246 + HP15_2753 0.23 -1.0 2,908,260 + HP15_2753 0.25 -0.1 2,908,272 + HP15_2753 0.26 +1.1 2,908,296 - HP15_2753 0.29 +2.4 2,908,426 - HP15_2753 0.44 -0.4 2,908,464 + HP15_2753 0.49 +0.1 2,908,472 - HP15_2753 0.50 -0.3 2,908,473 - HP15_2753 0.50 +1.0 2,908,473 - HP15_2753 0.50 +1.1 2,908,796 + HP15_2753 0.87 -0.3 2,908,877 + -0.3 2,909,159 - HP15_2754 0.11 -0.6 2,909,338 + HP15_2754 0.86 -0.2 2,909,622 + HP15_2755 0.28 -0.4 2,909,622 + HP15_2755 0.28 +0.7 2,909,623 - HP15_2755 0.28 -1.1 2,909,734 + HP15_2755 0.40 +0.2 2,909,747 - HP15_2755 0.42 +0.2 2,909,791 - HP15_2755 0.47 -1.8 2,909,796 - HP15_2755 0.47 -1.6 2,909,796 - HP15_2755 0.47 -0.8 2,909,883 - HP15_2755 0.57 -0.0
Or see this region's nucleotide sequence