Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2595 and HP15_2596 are separated by 20 nucleotides HP15_2596 and HP15_2597 are separated by 76 nucleotides HP15_2597 and HP15_2598 are separated by 18 nucleotides HP15_2598 and HP15_2599 are separated by 1 nucleotides
HP15_2595: HP15_2595 - acyl-CoA synthetase, at 2,742,942 to 2,744,585
_2595
HP15_2596: HP15_2596 - endoribonuclease L-PSP, at 2,744,606 to 2,744,923
_2596
HP15_2597: HP15_2597 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,745,000 to 2,746,904
_2597
HP15_2598: HP15_2598 - isopropylmalate isomerase small subunit, at 2,746,923 to 2,747,558
_2598
HP15_2599: HP15_2599 - isopropylmalate isomerase large subunit, at 2,747,560 to 2,748,969
_2599
Position (kb)
2744
2745
2746
2747 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2744.075 kb on + strand, within HP15_2595 at 2744.116 kb on - strand, within HP15_2595 at 2744.134 kb on + strand, within HP15_2595 at 2744.183 kb on + strand, within HP15_2595 at 2744.183 kb on + strand, within HP15_2595 at 2744.234 kb on + strand, within HP15_2595 at 2744.338 kb on - strand, within HP15_2595 at 2744.397 kb on + strand, within HP15_2595 at 2744.407 kb on + strand, within HP15_2595 at 2744.415 kb on - strand, within HP15_2595 at 2744.421 kb on + strand at 2744.431 kb on + strand at 2744.431 kb on + strand at 2744.431 kb on + strand at 2744.434 kb on - strand at 2744.439 kb on - strand at 2744.450 kb on - strand at 2744.612 kb on - strand at 2744.661 kb on - strand, within HP15_2596 at 2744.688 kb on + strand, within HP15_2596 at 2744.791 kb on + strand, within HP15_2596 at 2744.879 kb on - strand, within HP15_2596 at 2745.023 kb on - strand at 2745.115 kb on + strand at 2745.168 kb on - strand at 2745.168 kb on - strand at 2745.203 kb on - strand, within HP15_2597 at 2745.277 kb on + strand, within HP15_2597 at 2745.399 kb on - strand, within HP15_2597 at 2745.424 kb on - strand, within HP15_2597 at 2745.516 kb on + strand, within HP15_2597 at 2745.526 kb on + strand, within HP15_2597 at 2745.526 kb on + strand, within HP15_2597 at 2745.591 kb on - strand, within HP15_2597 at 2745.648 kb on - strand, within HP15_2597 at 2745.669 kb on - strand, within HP15_2597 at 2745.748 kb on - strand, within HP15_2597 at 2745.873 kb on + strand, within HP15_2597 at 2745.873 kb on + strand, within HP15_2597 at 2745.875 kb on + strand, within HP15_2597 at 2745.881 kb on - strand, within HP15_2597 at 2745.900 kb on + strand, within HP15_2597 at 2745.917 kb on + strand, within HP15_2597 at 2745.933 kb on - strand, within HP15_2597 at 2746.000 kb on + strand, within HP15_2597 at 2746.085 kb on - strand, within HP15_2597 at 2746.087 kb on - strand, within HP15_2597 at 2746.092 kb on - strand, within HP15_2597 at 2746.227 kb on + strand, within HP15_2597 at 2746.227 kb on + strand, within HP15_2597 at 2746.286 kb on + strand, within HP15_2597 at 2746.307 kb on - strand, within HP15_2597 at 2746.442 kb on + strand, within HP15_2597 at 2746.477 kb on + strand, within HP15_2597 at 2746.549 kb on + strand, within HP15_2597 at 2746.552 kb on - strand, within HP15_2597 at 2746.552 kb on - strand, within HP15_2597 at 2746.557 kb on + strand, within HP15_2597 at 2746.565 kb on + strand, within HP15_2597 at 2746.573 kb on - strand, within HP15_2597 at 2746.644 kb on + strand, within HP15_2597 at 2746.729 kb on + strand at 2746.752 kb on + strand at 2746.758 kb on - strand at 2746.849 kb on - strand at 2746.940 kb on + strand at 2746.963 kb on + strand at 2747.005 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.111 kb on + strand, within HP15_2598 at 2747.119 kb on - strand, within HP15_2598 at 2747.311 kb on - strand, within HP15_2598 at 2747.334 kb on + strand, within HP15_2598 at 2747.334 kb on + strand, within HP15_2598 at 2747.342 kb on - strand, within HP15_2598 at 2747.389 kb on + strand, within HP15_2598 at 2747.449 kb on - strand, within HP15_2598 at 2747.489 kb on - strand, within HP15_2598 at 2747.494 kb on - strand, within HP15_2598 at 2747.499 kb on + strand at 2747.521 kb on + strand at 2747.552 kb on + strand at 2747.642 kb on + strand at 2747.642 kb on + strand at 2747.650 kb on - strand at 2747.699 kb on + strand at 2747.707 kb on - strand, within HP15_2599 at 2747.834 kb on + strand, within HP15_2599
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 2,744,075 + HP15_2595 0.69 -0.4 2,744,116 - HP15_2595 0.71 +0.3 2,744,134 + HP15_2595 0.73 -0.7 2,744,183 + HP15_2595 0.75 -0.7 2,744,183 + HP15_2595 0.75 +1.9 2,744,234 + HP15_2595 0.79 +0.6 2,744,338 - HP15_2595 0.85 +1.0 2,744,397 + HP15_2595 0.89 -0.5 2,744,407 + HP15_2595 0.89 +1.3 2,744,415 - HP15_2595 0.90 +0.9 2,744,421 + -0.1 2,744,431 + -0.1 2,744,431 + -2.9 2,744,431 + -1.2 2,744,434 - +1.1 2,744,439 - -0.3 2,744,450 - +1.7 2,744,612 - +1.3 2,744,661 - HP15_2596 0.17 +1.4 2,744,688 + HP15_2596 0.26 -1.1 2,744,791 + HP15_2596 0.58 -0.1 2,744,879 - HP15_2596 0.86 -1.7 2,745,023 - -0.1 2,745,115 + +0.2 2,745,168 - -0.2 2,745,168 - +0.6 2,745,203 - HP15_2597 0.11 -0.4 2,745,277 + HP15_2597 0.15 +1.5 2,745,399 - HP15_2597 0.21 -0.0 2,745,424 - HP15_2597 0.22 +2.1 2,745,516 + HP15_2597 0.27 +1.4 2,745,526 + HP15_2597 0.28 +1.0 2,745,526 + HP15_2597 0.28 +0.2 2,745,591 - HP15_2597 0.31 +1.6 2,745,648 - HP15_2597 0.34 -0.1 2,745,669 - HP15_2597 0.35 +3.1 2,745,748 - HP15_2597 0.39 -0.1 2,745,873 + HP15_2597 0.46 +1.3 2,745,873 + HP15_2597 0.46 +1.5 2,745,875 + HP15_2597 0.46 -0.3 2,745,881 - HP15_2597 0.46 -0.1 2,745,900 + HP15_2597 0.47 +1.8 2,745,917 + HP15_2597 0.48 -1.0 2,745,933 - HP15_2597 0.49 +1.7 2,746,000 + HP15_2597 0.52 -1.2 2,746,085 - HP15_2597 0.57 +1.5 2,746,087 - HP15_2597 0.57 -0.1 2,746,092 - HP15_2597 0.57 +1.7 2,746,227 + HP15_2597 0.64 +1.0 2,746,227 + HP15_2597 0.64 -0.2 2,746,286 + HP15_2597 0.68 +1.5 2,746,307 - HP15_2597 0.69 -0.6 2,746,442 + HP15_2597 0.76 -1.2 2,746,477 + HP15_2597 0.78 +2.7 2,746,549 + HP15_2597 0.81 -0.6 2,746,552 - HP15_2597 0.81 -0.1 2,746,552 - HP15_2597 0.81 -0.3 2,746,557 + HP15_2597 0.82 +2.0 2,746,565 + HP15_2597 0.82 +0.9 2,746,573 - HP15_2597 0.83 -0.5 2,746,644 + HP15_2597 0.86 +1.5 2,746,729 + +0.8 2,746,752 + +1.4 2,746,758 - +1.1 2,746,849 - -0.3 2,746,940 + +0.1 2,746,963 + -0.1 2,747,005 + HP15_2598 0.13 +1.8 2,747,111 + HP15_2598 0.30 -0.8 2,747,111 + HP15_2598 0.30 -0.7 2,747,111 + HP15_2598 0.30 -1.1 2,747,119 - HP15_2598 0.31 +2.3 2,747,311 - HP15_2598 0.61 -0.4 2,747,334 + HP15_2598 0.65 -0.4 2,747,334 + HP15_2598 0.65 +0.9 2,747,342 - HP15_2598 0.66 +0.9 2,747,389 + HP15_2598 0.73 +2.6 2,747,449 - HP15_2598 0.83 -1.2 2,747,489 - HP15_2598 0.89 +0.3 2,747,494 - HP15_2598 0.90 +0.8 2,747,499 + +1.4 2,747,521 + +0.5 2,747,552 + -1.1 2,747,642 + -0.1 2,747,642 + +0.3 2,747,650 - +0.9 2,747,699 + +0.8 2,747,707 - HP15_2599 0.10 -0.2 2,747,834 + HP15_2599 0.19 +0.2
Or see this region's nucleotide sequence