Strain Fitness in Marinobacter adhaerens HP15 around HP15_2597

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2595 and HP15_2596 are separated by 20 nucleotidesHP15_2596 and HP15_2597 are separated by 76 nucleotidesHP15_2597 and HP15_2598 are separated by 18 nucleotidesHP15_2598 and HP15_2599 are separated by 1 nucleotides HP15_2595: HP15_2595 - acyl-CoA synthetase, at 2,742,942 to 2,744,585 _2595 HP15_2596: HP15_2596 - endoribonuclease L-PSP, at 2,744,606 to 2,744,923 _2596 HP15_2597: HP15_2597 - two component, sigma54 specific, transcriptional regulator, Fis family, at 2,745,000 to 2,746,904 _2597 HP15_2598: HP15_2598 - isopropylmalate isomerase small subunit, at 2,746,923 to 2,747,558 _2598 HP15_2599: HP15_2599 - isopropylmalate isomerase large subunit, at 2,747,560 to 2,748,969 _2599 Position (kb) 2744 2745 2746 2747Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2744.075 kb on + strand, within HP15_2595at 2744.116 kb on - strand, within HP15_2595at 2744.134 kb on + strand, within HP15_2595at 2744.183 kb on + strand, within HP15_2595at 2744.183 kb on + strand, within HP15_2595at 2744.234 kb on + strand, within HP15_2595at 2744.338 kb on - strand, within HP15_2595at 2744.397 kb on + strand, within HP15_2595at 2744.407 kb on + strand, within HP15_2595at 2744.415 kb on - strand, within HP15_2595at 2744.421 kb on + strandat 2744.431 kb on + strandat 2744.431 kb on + strandat 2744.431 kb on + strandat 2744.434 kb on - strandat 2744.439 kb on - strandat 2744.450 kb on - strandat 2744.612 kb on - strandat 2744.661 kb on - strand, within HP15_2596at 2744.688 kb on + strand, within HP15_2596at 2744.791 kb on + strand, within HP15_2596at 2744.879 kb on - strand, within HP15_2596at 2745.023 kb on - strandat 2745.115 kb on + strandat 2745.168 kb on - strandat 2745.168 kb on - strandat 2745.203 kb on - strand, within HP15_2597at 2745.277 kb on + strand, within HP15_2597at 2745.399 kb on - strand, within HP15_2597at 2745.424 kb on - strand, within HP15_2597at 2745.516 kb on + strand, within HP15_2597at 2745.526 kb on + strand, within HP15_2597at 2745.526 kb on + strand, within HP15_2597at 2745.591 kb on - strand, within HP15_2597at 2745.648 kb on - strand, within HP15_2597at 2745.669 kb on - strand, within HP15_2597at 2745.748 kb on - strand, within HP15_2597at 2745.873 kb on + strand, within HP15_2597at 2745.873 kb on + strand, within HP15_2597at 2745.875 kb on + strand, within HP15_2597at 2745.881 kb on - strand, within HP15_2597at 2745.900 kb on + strand, within HP15_2597at 2745.917 kb on + strand, within HP15_2597at 2745.933 kb on - strand, within HP15_2597at 2746.000 kb on + strand, within HP15_2597at 2746.085 kb on - strand, within HP15_2597at 2746.087 kb on - strand, within HP15_2597at 2746.092 kb on - strand, within HP15_2597at 2746.227 kb on + strand, within HP15_2597at 2746.227 kb on + strand, within HP15_2597at 2746.286 kb on + strand, within HP15_2597at 2746.307 kb on - strand, within HP15_2597at 2746.442 kb on + strand, within HP15_2597at 2746.477 kb on + strand, within HP15_2597at 2746.549 kb on + strand, within HP15_2597at 2746.552 kb on - strand, within HP15_2597at 2746.552 kb on - strand, within HP15_2597at 2746.557 kb on + strand, within HP15_2597at 2746.565 kb on + strand, within HP15_2597at 2746.573 kb on - strand, within HP15_2597at 2746.644 kb on + strand, within HP15_2597at 2746.729 kb on + strandat 2746.752 kb on + strandat 2746.758 kb on - strandat 2746.849 kb on - strandat 2746.940 kb on + strandat 2746.963 kb on + strandat 2747.005 kb on + strand, within HP15_2598at 2747.111 kb on + strand, within HP15_2598at 2747.111 kb on + strand, within HP15_2598at 2747.111 kb on + strand, within HP15_2598at 2747.119 kb on - strand, within HP15_2598at 2747.311 kb on - strand, within HP15_2598at 2747.334 kb on + strand, within HP15_2598at 2747.334 kb on + strand, within HP15_2598at 2747.342 kb on - strand, within HP15_2598at 2747.389 kb on + strand, within HP15_2598at 2747.449 kb on - strand, within HP15_2598at 2747.489 kb on - strand, within HP15_2598at 2747.494 kb on - strand, within HP15_2598at 2747.499 kb on + strandat 2747.521 kb on + strandat 2747.552 kb on + strandat 2747.642 kb on + strandat 2747.642 kb on + strandat 2747.650 kb on - strandat 2747.699 kb on + strandat 2747.707 kb on - strand, within HP15_2599at 2747.834 kb on + strand, within HP15_2599

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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2,744,075 + HP15_2595 0.69 -0.4
2,744,116 - HP15_2595 0.71 +0.3
2,744,134 + HP15_2595 0.73 -0.7
2,744,183 + HP15_2595 0.75 -0.7
2,744,183 + HP15_2595 0.75 +1.9
2,744,234 + HP15_2595 0.79 +0.6
2,744,338 - HP15_2595 0.85 +1.0
2,744,397 + HP15_2595 0.89 -0.5
2,744,407 + HP15_2595 0.89 +1.3
2,744,415 - HP15_2595 0.90 +0.9
2,744,421 + -0.1
2,744,431 + -0.1
2,744,431 + -2.9
2,744,431 + -1.2
2,744,434 - +1.1
2,744,439 - -0.3
2,744,450 - +1.7
2,744,612 - +1.3
2,744,661 - HP15_2596 0.17 +1.4
2,744,688 + HP15_2596 0.26 -1.1
2,744,791 + HP15_2596 0.58 -0.1
2,744,879 - HP15_2596 0.86 -1.7
2,745,023 - -0.1
2,745,115 + +0.2
2,745,168 - -0.2
2,745,168 - +0.6
2,745,203 - HP15_2597 0.11 -0.4
2,745,277 + HP15_2597 0.15 +1.5
2,745,399 - HP15_2597 0.21 -0.0
2,745,424 - HP15_2597 0.22 +2.1
2,745,516 + HP15_2597 0.27 +1.4
2,745,526 + HP15_2597 0.28 +1.0
2,745,526 + HP15_2597 0.28 +0.2
2,745,591 - HP15_2597 0.31 +1.6
2,745,648 - HP15_2597 0.34 -0.1
2,745,669 - HP15_2597 0.35 +3.1
2,745,748 - HP15_2597 0.39 -0.1
2,745,873 + HP15_2597 0.46 +1.3
2,745,873 + HP15_2597 0.46 +1.5
2,745,875 + HP15_2597 0.46 -0.3
2,745,881 - HP15_2597 0.46 -0.1
2,745,900 + HP15_2597 0.47 +1.8
2,745,917 + HP15_2597 0.48 -1.0
2,745,933 - HP15_2597 0.49 +1.7
2,746,000 + HP15_2597 0.52 -1.2
2,746,085 - HP15_2597 0.57 +1.5
2,746,087 - HP15_2597 0.57 -0.1
2,746,092 - HP15_2597 0.57 +1.7
2,746,227 + HP15_2597 0.64 +1.0
2,746,227 + HP15_2597 0.64 -0.2
2,746,286 + HP15_2597 0.68 +1.5
2,746,307 - HP15_2597 0.69 -0.6
2,746,442 + HP15_2597 0.76 -1.2
2,746,477 + HP15_2597 0.78 +2.7
2,746,549 + HP15_2597 0.81 -0.6
2,746,552 - HP15_2597 0.81 -0.1
2,746,552 - HP15_2597 0.81 -0.3
2,746,557 + HP15_2597 0.82 +2.0
2,746,565 + HP15_2597 0.82 +0.9
2,746,573 - HP15_2597 0.83 -0.5
2,746,644 + HP15_2597 0.86 +1.5
2,746,729 + +0.8
2,746,752 + +1.4
2,746,758 - +1.1
2,746,849 - -0.3
2,746,940 + +0.1
2,746,963 + -0.1
2,747,005 + HP15_2598 0.13 +1.8
2,747,111 + HP15_2598 0.30 -0.8
2,747,111 + HP15_2598 0.30 -0.7
2,747,111 + HP15_2598 0.30 -1.1
2,747,119 - HP15_2598 0.31 +2.3
2,747,311 - HP15_2598 0.61 -0.4
2,747,334 + HP15_2598 0.65 -0.4
2,747,334 + HP15_2598 0.65 +0.9
2,747,342 - HP15_2598 0.66 +0.9
2,747,389 + HP15_2598 0.73 +2.6
2,747,449 - HP15_2598 0.83 -1.2
2,747,489 - HP15_2598 0.89 +0.3
2,747,494 - HP15_2598 0.90 +0.8
2,747,499 + +1.4
2,747,521 + +0.5
2,747,552 + -1.1
2,747,642 + -0.1
2,747,642 + +0.3
2,747,650 - +0.9
2,747,699 + +0.8
2,747,707 - HP15_2599 0.10 -0.2
2,747,834 + HP15_2599 0.19 +0.2

Or see this region's nucleotide sequence