Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2482 and HP15_2483 are separated by 22 nucleotides HP15_2483 and HP15_2484 overlap by 4 nucleotides HP15_2484 and HP15_2485 are separated by 26 nucleotides
HP15_2482: HP15_2482 - dethiobiotin synthetase, at 2,623,056 to 2,623,748
_2482
HP15_2483: HP15_2483 - protein containing methyltransferase type 11 domain, at 2,623,771 to 2,624,592
_2483
HP15_2484: HP15_2484 - biotin biosynthesis protein BioH, at 2,624,589 to 2,625,314
_2484
HP15_2485: HP15_2485 - 8-amino-7-oxononanoate synthase, at 2,625,341 to 2,626,516
_2485
Position (kb)
2624
2625
2626 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2623.662 kb on - strand, within HP15_2482 at 2623.776 kb on - strand at 2623.784 kb on - strand at 2623.807 kb on - strand at 2623.807 kb on - strand at 2623.896 kb on - strand, within HP15_2483 at 2623.911 kb on - strand, within HP15_2483 at 2624.110 kb on + strand, within HP15_2483 at 2624.110 kb on + strand, within HP15_2483 at 2624.110 kb on + strand, within HP15_2483 at 2624.185 kb on - strand, within HP15_2483 at 2624.276 kb on - strand, within HP15_2483 at 2624.405 kb on - strand, within HP15_2483 at 2624.425 kb on + strand, within HP15_2483 at 2624.484 kb on + strand, within HP15_2483 at 2624.530 kb on + strand at 2624.532 kb on - strand at 2624.587 kb on + strand at 2624.666 kb on + strand, within HP15_2484 at 2624.771 kb on + strand, within HP15_2484 at 2624.852 kb on + strand, within HP15_2484 at 2624.896 kb on - strand, within HP15_2484 at 2624.923 kb on + strand, within HP15_2484 at 2624.964 kb on - strand, within HP15_2484 at 2624.972 kb on - strand, within HP15_2484 at 2625.066 kb on + strand, within HP15_2484 at 2625.073 kb on + strand, within HP15_2484 at 2625.073 kb on + strand, within HP15_2484 at 2625.081 kb on - strand, within HP15_2484 at 2625.090 kb on + strand, within HP15_2484 at 2625.163 kb on - strand, within HP15_2484 at 2625.166 kb on + strand, within HP15_2484 at 2625.174 kb on - strand, within HP15_2484 at 2625.429 kb on + strand at 2625.494 kb on - strand, within HP15_2485 at 2625.508 kb on + strand, within HP15_2485 at 2625.597 kb on - strand, within HP15_2485 at 2625.665 kb on - strand, within HP15_2485 at 2625.669 kb on - strand, within HP15_2485 at 2625.808 kb on - strand, within HP15_2485 at 2625.810 kb on + strand, within HP15_2485 at 2625.818 kb on - strand, within HP15_2485 at 2625.859 kb on - strand, within HP15_2485 at 2625.893 kb on + strand, within HP15_2485 at 2625.956 kb on + strand, within HP15_2485 at 2626.097 kb on + strand, within HP15_2485 at 2626.102 kb on + strand, within HP15_2485 at 2626.105 kb on - strand, within HP15_2485 at 2626.161 kb on + strand, within HP15_2485 at 2626.310 kb on + strand, within HP15_2485 at 2626.310 kb on + strand, within HP15_2485
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 2,623,662 - HP15_2482 0.87 -0.2 2,623,776 - -1.0 2,623,784 - -0.2 2,623,807 - +0.5 2,623,807 - +1.2 2,623,896 - HP15_2483 0.15 +1.8 2,623,911 - HP15_2483 0.17 +1.3 2,624,110 + HP15_2483 0.41 -0.3 2,624,110 + HP15_2483 0.41 +1.2 2,624,110 + HP15_2483 0.41 +0.4 2,624,185 - HP15_2483 0.50 +0.5 2,624,276 - HP15_2483 0.61 +1.6 2,624,405 - HP15_2483 0.77 +1.4 2,624,425 + HP15_2483 0.80 -0.2 2,624,484 + HP15_2483 0.87 -0.0 2,624,530 + +0.0 2,624,532 - -0.9 2,624,587 + -0.8 2,624,666 + HP15_2484 0.11 +0.1 2,624,771 + HP15_2484 0.25 -0.3 2,624,852 + HP15_2484 0.36 +1.4 2,624,896 - HP15_2484 0.42 +1.7 2,624,923 + HP15_2484 0.46 +1.7 2,624,964 - HP15_2484 0.52 +0.2 2,624,972 - HP15_2484 0.53 +2.0 2,625,066 + HP15_2484 0.66 -0.9 2,625,073 + HP15_2484 0.67 -0.5 2,625,073 + HP15_2484 0.67 +0.6 2,625,081 - HP15_2484 0.68 +1.0 2,625,090 + HP15_2484 0.69 +1.5 2,625,163 - HP15_2484 0.79 -0.1 2,625,166 + HP15_2484 0.79 -1.0 2,625,174 - HP15_2484 0.81 -0.0 2,625,429 + -0.6 2,625,494 - HP15_2485 0.13 +1.4 2,625,508 + HP15_2485 0.14 -1.7 2,625,597 - HP15_2485 0.22 +0.2 2,625,665 - HP15_2485 0.28 -2.0 2,625,669 - HP15_2485 0.28 +0.7 2,625,808 - HP15_2485 0.40 -0.2 2,625,810 + HP15_2485 0.40 +0.4 2,625,818 - HP15_2485 0.41 -0.4 2,625,859 - HP15_2485 0.44 -0.2 2,625,893 + HP15_2485 0.47 +1.2 2,625,956 + HP15_2485 0.52 -0.4 2,626,097 + HP15_2485 0.64 -0.2 2,626,102 + HP15_2485 0.65 +0.0 2,626,105 - HP15_2485 0.65 +1.5 2,626,161 + HP15_2485 0.70 +1.0 2,626,310 + HP15_2485 0.82 -0.2 2,626,310 + HP15_2485 0.82 -0.3
Or see this region's nucleotide sequence