Strain Fitness in Marinobacter adhaerens HP15 around HP15_2484

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2482 and HP15_2483 are separated by 22 nucleotidesHP15_2483 and HP15_2484 overlap by 4 nucleotidesHP15_2484 and HP15_2485 are separated by 26 nucleotides HP15_2482: HP15_2482 - dethiobiotin synthetase, at 2,623,056 to 2,623,748 _2482 HP15_2483: HP15_2483 - protein containing methyltransferase type 11 domain, at 2,623,771 to 2,624,592 _2483 HP15_2484: HP15_2484 - biotin biosynthesis protein BioH, at 2,624,589 to 2,625,314 _2484 HP15_2485: HP15_2485 - 8-amino-7-oxononanoate synthase, at 2,625,341 to 2,626,516 _2485 Position (kb) 2624 2625 2626Strain fitness (log2 ratio) -2 -1 0 1 2at 2623.662 kb on - strand, within HP15_2482at 2623.776 kb on - strandat 2623.784 kb on - strandat 2623.807 kb on - strandat 2623.807 kb on - strandat 2623.896 kb on - strand, within HP15_2483at 2623.911 kb on - strand, within HP15_2483at 2624.110 kb on + strand, within HP15_2483at 2624.110 kb on + strand, within HP15_2483at 2624.110 kb on + strand, within HP15_2483at 2624.185 kb on - strand, within HP15_2483at 2624.276 kb on - strand, within HP15_2483at 2624.405 kb on - strand, within HP15_2483at 2624.425 kb on + strand, within HP15_2483at 2624.484 kb on + strand, within HP15_2483at 2624.530 kb on + strandat 2624.532 kb on - strandat 2624.587 kb on + strandat 2624.666 kb on + strand, within HP15_2484at 2624.771 kb on + strand, within HP15_2484at 2624.852 kb on + strand, within HP15_2484at 2624.896 kb on - strand, within HP15_2484at 2624.923 kb on + strand, within HP15_2484at 2624.964 kb on - strand, within HP15_2484at 2624.972 kb on - strand, within HP15_2484at 2625.066 kb on + strand, within HP15_2484at 2625.073 kb on + strand, within HP15_2484at 2625.073 kb on + strand, within HP15_2484at 2625.081 kb on - strand, within HP15_2484at 2625.090 kb on + strand, within HP15_2484at 2625.163 kb on - strand, within HP15_2484at 2625.166 kb on + strand, within HP15_2484at 2625.174 kb on - strand, within HP15_2484at 2625.429 kb on + strandat 2625.494 kb on - strand, within HP15_2485at 2625.508 kb on + strand, within HP15_2485at 2625.597 kb on - strand, within HP15_2485at 2625.665 kb on - strand, within HP15_2485at 2625.669 kb on - strand, within HP15_2485at 2625.808 kb on - strand, within HP15_2485at 2625.810 kb on + strand, within HP15_2485at 2625.818 kb on - strand, within HP15_2485at 2625.859 kb on - strand, within HP15_2485at 2625.893 kb on + strand, within HP15_2485at 2625.956 kb on + strand, within HP15_2485at 2626.097 kb on + strand, within HP15_2485at 2626.102 kb on + strand, within HP15_2485at 2626.105 kb on - strand, within HP15_2485at 2626.161 kb on + strand, within HP15_2485at 2626.310 kb on + strand, within HP15_2485at 2626.310 kb on + strand, within HP15_2485

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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2,623,662 - HP15_2482 0.87 -0.2
2,623,776 - -1.0
2,623,784 - -0.2
2,623,807 - +0.5
2,623,807 - +1.2
2,623,896 - HP15_2483 0.15 +1.8
2,623,911 - HP15_2483 0.17 +1.3
2,624,110 + HP15_2483 0.41 -0.3
2,624,110 + HP15_2483 0.41 +1.2
2,624,110 + HP15_2483 0.41 +0.4
2,624,185 - HP15_2483 0.50 +0.5
2,624,276 - HP15_2483 0.61 +1.6
2,624,405 - HP15_2483 0.77 +1.4
2,624,425 + HP15_2483 0.80 -0.2
2,624,484 + HP15_2483 0.87 -0.0
2,624,530 + +0.0
2,624,532 - -0.9
2,624,587 + -0.8
2,624,666 + HP15_2484 0.11 +0.1
2,624,771 + HP15_2484 0.25 -0.3
2,624,852 + HP15_2484 0.36 +1.4
2,624,896 - HP15_2484 0.42 +1.7
2,624,923 + HP15_2484 0.46 +1.7
2,624,964 - HP15_2484 0.52 +0.2
2,624,972 - HP15_2484 0.53 +2.0
2,625,066 + HP15_2484 0.66 -0.9
2,625,073 + HP15_2484 0.67 -0.5
2,625,073 + HP15_2484 0.67 +0.6
2,625,081 - HP15_2484 0.68 +1.0
2,625,090 + HP15_2484 0.69 +1.5
2,625,163 - HP15_2484 0.79 -0.1
2,625,166 + HP15_2484 0.79 -1.0
2,625,174 - HP15_2484 0.81 -0.0
2,625,429 + -0.6
2,625,494 - HP15_2485 0.13 +1.4
2,625,508 + HP15_2485 0.14 -1.7
2,625,597 - HP15_2485 0.22 +0.2
2,625,665 - HP15_2485 0.28 -2.0
2,625,669 - HP15_2485 0.28 +0.7
2,625,808 - HP15_2485 0.40 -0.2
2,625,810 + HP15_2485 0.40 +0.4
2,625,818 - HP15_2485 0.41 -0.4
2,625,859 - HP15_2485 0.44 -0.2
2,625,893 + HP15_2485 0.47 +1.2
2,625,956 + HP15_2485 0.52 -0.4
2,626,097 + HP15_2485 0.64 -0.2
2,626,102 + HP15_2485 0.65 +0.0
2,626,105 - HP15_2485 0.65 +1.5
2,626,161 + HP15_2485 0.70 +1.0
2,626,310 + HP15_2485 0.82 -0.2
2,626,310 + HP15_2485 0.82 -0.3

Or see this region's nucleotide sequence