Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2123 and HP15_2124 are separated by 206 nucleotides HP15_2124 and HP15_2125 are separated by 35 nucleotides HP15_2125 and HP15_2126 are separated by 20 nucleotides
HP15_2123: HP15_2123 - peptidase C39, bacteriocin processing, at 2,222,635 to 2,223,435
_2123
HP15_2124: HP15_2124 - sodium: dicarboxylate cotransporter, at 2,223,642 to 2,225,123
_2124
HP15_2125: HP15_2125 - uncharacterized conserved protein UCP020606, at 2,225,159 to 2,225,764
_2125
HP15_2126: HP15_2126 - N-acyl-D-glutamate amidohydrolase, at 2,225,785 to 2,227,533
_2126
Position (kb)
2223
2224
2225
2226 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2222.676 kb on - strand at 2222.738 kb on - strand, within HP15_2123 at 2222.738 kb on - strand, within HP15_2123 at 2222.810 kb on - strand, within HP15_2123 at 2223.065 kb on + strand, within HP15_2123 at 2223.168 kb on - strand, within HP15_2123 at 2223.214 kb on + strand, within HP15_2123 at 2223.222 kb on - strand, within HP15_2123 at 2223.357 kb on - strand at 2223.560 kb on + strand at 2223.637 kb on - strand at 2223.653 kb on + strand at 2223.675 kb on + strand at 2223.675 kb on + strand at 2223.683 kb on - strand at 2223.715 kb on - strand at 2223.715 kb on - strand at 2223.862 kb on - strand, within HP15_2124 at 2223.866 kb on + strand, within HP15_2124 at 2223.870 kb on - strand, within HP15_2124 at 2223.992 kb on + strand, within HP15_2124 at 2224.081 kb on + strand, within HP15_2124 at 2224.190 kb on + strand, within HP15_2124 at 2224.198 kb on - strand, within HP15_2124 at 2224.579 kb on + strand, within HP15_2124 at 2224.579 kb on + strand, within HP15_2124 at 2224.587 kb on - strand, within HP15_2124 at 2224.810 kb on - strand, within HP15_2124 at 2224.919 kb on - strand, within HP15_2124 at 2224.969 kb on + strand, within HP15_2124 at 2225.237 kb on - strand, within HP15_2125 at 2225.242 kb on - strand, within HP15_2125 at 2225.242 kb on - strand, within HP15_2125 at 2225.263 kb on + strand, within HP15_2125 at 2225.267 kb on - strand, within HP15_2125 at 2225.308 kb on + strand, within HP15_2125 at 2225.311 kb on - strand, within HP15_2125 at 2225.347 kb on + strand, within HP15_2125 at 2225.379 kb on + strand, within HP15_2125 at 2225.387 kb on - strand, within HP15_2125 at 2225.427 kb on - strand, within HP15_2125 at 2225.474 kb on - strand, within HP15_2125 at 2225.535 kb on + strand, within HP15_2125 at 2225.545 kb on - strand, within HP15_2125 at 2225.736 kb on - strand at 2225.964 kb on + strand, within HP15_2126 at 2226.000 kb on - strand, within HP15_2126 at 2226.018 kb on + strand, within HP15_2126 at 2226.028 kb on + strand, within HP15_2126 at 2226.036 kb on - strand, within HP15_2126
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 2,222,676 - +1.2 2,222,738 - HP15_2123 0.13 +1.6 2,222,738 - HP15_2123 0.13 +0.7 2,222,810 - HP15_2123 0.22 +1.4 2,223,065 + HP15_2123 0.54 -0.1 2,223,168 - HP15_2123 0.67 +1.2 2,223,214 + HP15_2123 0.72 -0.8 2,223,222 - HP15_2123 0.73 -1.2 2,223,357 - +1.5 2,223,560 + +1.7 2,223,637 - +0.5 2,223,653 + -0.2 2,223,675 + -1.0 2,223,675 + -0.5 2,223,683 - -0.7 2,223,715 - +1.6 2,223,715 - +0.3 2,223,862 - HP15_2124 0.15 -0.9 2,223,866 + HP15_2124 0.15 +1.4 2,223,870 - HP15_2124 0.15 -0.0 2,223,992 + HP15_2124 0.24 -0.1 2,224,081 + HP15_2124 0.30 -0.3 2,224,190 + HP15_2124 0.37 -1.0 2,224,198 - HP15_2124 0.38 +0.4 2,224,579 + HP15_2124 0.63 -1.0 2,224,579 + HP15_2124 0.63 -1.7 2,224,587 - HP15_2124 0.64 -0.4 2,224,810 - HP15_2124 0.79 +1.7 2,224,919 - HP15_2124 0.86 -1.0 2,224,969 + HP15_2124 0.90 -0.1 2,225,237 - HP15_2125 0.13 -2.3 2,225,242 - HP15_2125 0.14 +0.9 2,225,242 - HP15_2125 0.14 -0.1 2,225,263 + HP15_2125 0.17 -0.9 2,225,267 - HP15_2125 0.18 +0.0 2,225,308 + HP15_2125 0.25 -0.9 2,225,311 - HP15_2125 0.25 +1.3 2,225,347 + HP15_2125 0.31 +1.0 2,225,379 + HP15_2125 0.36 -1.1 2,225,387 - HP15_2125 0.38 +1.3 2,225,427 - HP15_2125 0.44 +0.1 2,225,474 - HP15_2125 0.52 +0.3 2,225,535 + HP15_2125 0.62 -0.3 2,225,545 - HP15_2125 0.64 +2.6 2,225,736 - +1.4 2,225,964 + HP15_2126 0.10 +0.9 2,226,000 - HP15_2126 0.12 -0.1 2,226,018 + HP15_2126 0.13 +2.7 2,226,028 + HP15_2126 0.14 -0.8 2,226,036 - HP15_2126 0.14 +0.1
Or see this region's nucleotide sequence