Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1954 and HP15_1955 are separated by 44 nucleotides HP15_1955 and HP15_1956 are separated by 164 nucleotides HP15_1956 and HP15_1957 overlap by 4 nucleotides
HP15_1954: HP15_1954 - phage tail tape measure protein, family, at 2,072,584 to 2,075,346
_1954
HP15_1955: HP15_1955 - conserved hypothetical protein, secreted, at 2,075,391 to 2,075,807
_1955
HP15_1956: HP15_1956 - hypothetical protein, at 2,075,972 to 2,076,478
_1956
HP15_1957: HP15_1957 - hypothetical protein, at 2,076,475 to 2,077,446
_1957
Position (kb)
2075
2076 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2074.426 kb on + strand, within HP15_1954 at 2074.452 kb on - strand, within HP15_1954 at 2074.557 kb on + strand, within HP15_1954 at 2074.562 kb on + strand, within HP15_1954 at 2074.577 kb on - strand, within HP15_1954 at 2074.588 kb on + strand, within HP15_1954 at 2074.691 kb on + strand, within HP15_1954 at 2074.708 kb on + strand, within HP15_1954 at 2074.729 kb on + strand, within HP15_1954 at 2074.806 kb on + strand, within HP15_1954 at 2074.861 kb on + strand, within HP15_1954 at 2075.003 kb on - strand, within HP15_1954 at 2075.190 kb on + strand at 2075.250 kb on - strand at 2075.304 kb on + strand at 2075.377 kb on + strand at 2075.538 kb on + strand, within HP15_1955 at 2075.587 kb on + strand, within HP15_1955 at 2075.617 kb on - strand, within HP15_1955 at 2075.656 kb on - strand, within HP15_1955 at 2075.696 kb on - strand, within HP15_1955 at 2075.905 kb on + strand at 2075.913 kb on - strand at 2075.970 kb on + strand at 2075.970 kb on + strand at 2075.977 kb on - strand at 2075.988 kb on + strand at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.035 kb on - strand, within HP15_1956 at 2076.067 kb on + strand, within HP15_1956 at 2076.075 kb on - strand, within HP15_1956 at 2076.108 kb on + strand, within HP15_1956 at 2076.116 kb on - strand, within HP15_1956 at 2076.318 kb on + strand, within HP15_1956 at 2076.380 kb on - strand, within HP15_1956 at 2076.570 kb on - strand at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.576 kb on + strand, within HP15_1957 at 2076.683 kb on - strand, within HP15_1957 at 2076.693 kb on - strand, within HP15_1957 at 2076.697 kb on + strand, within HP15_1957 at 2076.702 kb on + strand, within HP15_1957 at 2076.731 kb on + strand, within HP15_1957 at 2076.739 kb on - strand, within HP15_1957 at 2076.744 kb on - strand, within HP15_1957 at 2076.744 kb on - strand, within HP15_1957 at 2076.773 kb on - strand, within HP15_1957
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 2,074,426 + HP15_1954 0.67 +1.3 2,074,452 - HP15_1954 0.68 -0.2 2,074,557 + HP15_1954 0.71 +0.0 2,074,562 + HP15_1954 0.72 +1.1 2,074,577 - HP15_1954 0.72 +0.6 2,074,588 + HP15_1954 0.73 -0.5 2,074,691 + HP15_1954 0.76 +0.8 2,074,708 + HP15_1954 0.77 -0.5 2,074,729 + HP15_1954 0.78 +0.6 2,074,806 + HP15_1954 0.80 -0.2 2,074,861 + HP15_1954 0.82 +1.4 2,075,003 - HP15_1954 0.88 -0.9 2,075,190 + -0.4 2,075,250 - -0.4 2,075,304 + +0.6 2,075,377 + +1.1 2,075,538 + HP15_1955 0.35 +0.5 2,075,587 + HP15_1955 0.47 -0.6 2,075,617 - HP15_1955 0.54 -1.3 2,075,656 - HP15_1955 0.64 -0.4 2,075,696 - HP15_1955 0.73 -0.2 2,075,905 + +0.8 2,075,913 - +0.0 2,075,970 + -0.4 2,075,970 + +2.6 2,075,977 - +0.6 2,075,988 + -1.0 2,076,035 - HP15_1956 0.12 -0.4 2,076,035 - HP15_1956 0.12 -0.6 2,076,035 - HP15_1956 0.12 -0.1 2,076,035 - HP15_1956 0.12 -0.7 2,076,035 - HP15_1956 0.12 +3.2 2,076,067 + HP15_1956 0.19 +0.5 2,076,075 - HP15_1956 0.20 +1.2 2,076,108 + HP15_1956 0.27 +1.2 2,076,116 - HP15_1956 0.28 +0.0 2,076,318 + HP15_1956 0.68 +0.6 2,076,380 - HP15_1956 0.80 -0.4 2,076,570 - +1.0 2,076,576 + HP15_1957 0.10 +0.6 2,076,576 + HP15_1957 0.10 -0.4 2,076,576 + HP15_1957 0.10 -0.4 2,076,576 + HP15_1957 0.10 -0.4 2,076,683 - HP15_1957 0.21 +1.5 2,076,693 - HP15_1957 0.22 +0.4 2,076,697 + HP15_1957 0.23 +0.2 2,076,702 + HP15_1957 0.23 +0.0 2,076,731 + HP15_1957 0.26 -1.2 2,076,739 - HP15_1957 0.27 -0.1 2,076,744 - HP15_1957 0.28 +2.3 2,076,744 - HP15_1957 0.28 -1.9 2,076,773 - HP15_1957 0.31 -0.8
Or see this region's nucleotide sequence