Strain Fitness in Marinobacter adhaerens HP15 around HP15_1930

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1929 and HP15_1930 are separated by 35 nucleotidesHP15_1930 and HP15_1931 overlap by 4 nucleotides HP15_1929: HP15_1929 - AcnD-accessory protein PrpF, at 2,046,393 to 2,047,532 _1929 HP15_1930: HP15_1930 - aconitate hydratase 1, at 2,047,568 to 2,050,165 _1930 HP15_1931: HP15_1931 - 2-methylcitrate synthase/citrate synthase II, at 2,050,162 to 2,051,292 _1931 Position (kb) 2047 2048 2049 2050 2051Strain fitness (log2 ratio) -2 -1 0 1at 2050.249 kb on + strandat 2050.395 kb on - strand, within HP15_1931at 2050.467 kb on + strand, within HP15_1931at 2050.552 kb on + strand, within HP15_1931at 2050.572 kb on + strand, within HP15_1931at 2050.580 kb on - strand, within HP15_1931at 2050.622 kb on - strand, within HP15_1931at 2050.969 kb on + strand, within HP15_1931

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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2,050,249 + -2.4
2,050,395 - HP15_1931 0.21 -0.3
2,050,467 + HP15_1931 0.27 +1.2
2,050,552 + HP15_1931 0.34 -0.3
2,050,572 + HP15_1931 0.36 +0.4
2,050,580 - HP15_1931 0.37 -0.8
2,050,622 - HP15_1931 0.41 +0.2
2,050,969 + HP15_1931 0.71 -2.5

Or see this region's nucleotide sequence