Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1722 and HP15_1723 are separated by 148 nucleotides HP15_1723 and HP15_1724 are separated by 172 nucleotides HP15_1724 and HP15_1725 are separated by 40 nucleotides
HP15_1722: HP15_1722 - methyl-accepting chemotaxis sensory transducer, at 1,820,028 to 1,821,914
_1722
HP15_1723: HP15_1723 - hydrolase, carbon-nitrogen family protein, at 1,822,063 to 1,823,583
_1723
HP15_1724: HP15_1724 - conserved hypothetical protein, at 1,823,756 to 1,824,154
_1724
HP15_1725: HP15_1725 - conserved hypothetical protein, at 1,824,195 to 1,824,863
_1725
Position (kb)
1822
1823
1824 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1821.066 kb on + strand, within HP15_1722 at 1821.112 kb on + strand, within HP15_1722 at 1821.239 kb on + strand, within HP15_1722 at 1821.310 kb on - strand, within HP15_1722 at 1821.313 kb on - strand, within HP15_1722 at 1821.413 kb on - strand, within HP15_1722 at 1821.414 kb on + strand, within HP15_1722 at 1821.422 kb on - strand, within HP15_1722 at 1821.693 kb on + strand, within HP15_1722 at 1821.919 kb on - strand at 1822.090 kb on - strand at 1822.221 kb on - strand, within HP15_1723 at 1822.317 kb on - strand, within HP15_1723 at 1822.459 kb on - strand, within HP15_1723 at 1822.459 kb on - strand, within HP15_1723 at 1822.481 kb on + strand, within HP15_1723 at 1822.645 kb on + strand, within HP15_1723 at 1822.694 kb on - strand, within HP15_1723 at 1822.899 kb on + strand, within HP15_1723 at 1822.902 kb on - strand, within HP15_1723 at 1823.002 kb on - strand, within HP15_1723 at 1823.022 kb on + strand, within HP15_1723 at 1823.085 kb on + strand, within HP15_1723 at 1823.296 kb on + strand, within HP15_1723 at 1823.304 kb on - strand, within HP15_1723 at 1823.411 kb on - strand, within HP15_1723 at 1823.510 kb on - strand at 1824.037 kb on + strand, within HP15_1724 at 1824.435 kb on + strand, within HP15_1725 at 1824.491 kb on + strand, within HP15_1725 at 1824.547 kb on - strand, within HP15_1725
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,821,066 + HP15_1722 0.55 +1.1 1,821,112 + HP15_1722 0.57 -0.4 1,821,239 + HP15_1722 0.64 -0.3 1,821,310 - HP15_1722 0.68 +0.3 1,821,313 - HP15_1722 0.68 -0.6 1,821,413 - HP15_1722 0.73 +1.0 1,821,414 + HP15_1722 0.73 +0.3 1,821,422 - HP15_1722 0.74 -1.8 1,821,693 + HP15_1722 0.88 +0.5 1,821,919 - -0.2 1,822,090 - -0.1 1,822,221 - HP15_1723 0.10 -0.4 1,822,317 - HP15_1723 0.17 +1.7 1,822,459 - HP15_1723 0.26 -0.8 1,822,459 - HP15_1723 0.26 +0.5 1,822,481 + HP15_1723 0.27 +0.4 1,822,645 + HP15_1723 0.38 +0.8 1,822,694 - HP15_1723 0.41 +0.6 1,822,899 + HP15_1723 0.55 +0.8 1,822,902 - HP15_1723 0.55 -0.7 1,823,002 - HP15_1723 0.62 -1.0 1,823,022 + HP15_1723 0.63 +2.7 1,823,085 + HP15_1723 0.67 +0.6 1,823,296 + HP15_1723 0.81 +1.2 1,823,304 - HP15_1723 0.82 +1.4 1,823,411 - HP15_1723 0.89 +1.2 1,823,510 - +0.3 1,824,037 + HP15_1724 0.70 -0.4 1,824,435 + HP15_1725 0.36 -0.3 1,824,491 + HP15_1725 0.44 +0.2 1,824,547 - HP15_1725 0.53 +1.7
Or see this region's nucleotide sequence