Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1596 and HP15_1597 overlap by 20 nucleotides HP15_1597 and HP15_1598 overlap by 11 nucleotides
HP15_1596: HP15_1596 - D-amino acid dehydrogenase 2 small subunit, at 1,691,285 to 1,692,505
_1596
HP15_1597: HP15_1597 - carbohydrate kinase, FGGY, at 1,692,486 to 1,694,045
_1597
HP15_1598: HP15_1598 - FAD dependent oxidoreductase, at 1,694,035 to 1,695,633
_1598
Position (kb)
1692
1693
1694
1695 Strain fitness (log2 ratio)
-1
0
1
2 at 1691.528 kb on - strand, within HP15_1596 at 1691.585 kb on + strand, within HP15_1596 at 1691.593 kb on - strand, within HP15_1596 at 1691.792 kb on - strand, within HP15_1596 at 1691.972 kb on + strand, within HP15_1596 at 1692.034 kb on - strand, within HP15_1596 at 1692.293 kb on - strand, within HP15_1596 at 1692.335 kb on + strand, within HP15_1596 at 1692.343 kb on - strand, within HP15_1596 at 1692.385 kb on + strand at 1692.462 kb on + strand at 1692.467 kb on + strand at 1692.469 kb on + strand at 1692.529 kb on + strand at 1692.541 kb on + strand at 1692.665 kb on + strand, within HP15_1597 at 1692.673 kb on - strand, within HP15_1597 at 1692.875 kb on - strand, within HP15_1597 at 1692.906 kb on + strand, within HP15_1597 at 1692.914 kb on - strand, within HP15_1597 at 1692.914 kb on - strand, within HP15_1597 at 1693.018 kb on + strand, within HP15_1597 at 1693.018 kb on + strand, within HP15_1597 at 1693.026 kb on - strand, within HP15_1597 at 1693.026 kb on - strand, within HP15_1597 at 1693.026 kb on - strand, within HP15_1597 at 1693.026 kb on - strand, within HP15_1597 at 1693.135 kb on + strand, within HP15_1597 at 1693.143 kb on - strand, within HP15_1597 at 1693.204 kb on + strand, within HP15_1597 at 1693.344 kb on + strand, within HP15_1597 at 1693.382 kb on + strand, within HP15_1597 at 1693.609 kb on - strand, within HP15_1597 at 1693.687 kb on - strand, within HP15_1597 at 1693.805 kb on + strand, within HP15_1597 at 1693.827 kb on - strand, within HP15_1597 at 1693.867 kb on + strand, within HP15_1597 at 1693.880 kb on + strand, within HP15_1597 at 1693.911 kb on + strand at 1694.053 kb on + strand at 1694.201 kb on + strand, within HP15_1598 at 1694.205 kb on - strand, within HP15_1598 at 1694.223 kb on + strand, within HP15_1598 at 1694.282 kb on - strand, within HP15_1598 at 1694.284 kb on + strand, within HP15_1598 at 1694.287 kb on - strand, within HP15_1598 at 1694.316 kb on + strand, within HP15_1598 at 1694.413 kb on + strand, within HP15_1598 at 1694.414 kb on - strand, within HP15_1598 at 1694.414 kb on - strand, within HP15_1598 at 1694.519 kb on + strand, within HP15_1598 at 1694.519 kb on + strand, within HP15_1598 at 1694.548 kb on - strand, within HP15_1598 at 1694.619 kb on + strand, within HP15_1598 at 1694.625 kb on + strand, within HP15_1598 at 1694.625 kb on + strand, within HP15_1598 at 1694.625 kb on + strand, within HP15_1598 at 1694.633 kb on - strand, within HP15_1598 at 1694.806 kb on + strand, within HP15_1598 at 1694.814 kb on - strand, within HP15_1598 at 1694.865 kb on + strand, within HP15_1598 at 1694.870 kb on + strand, within HP15_1598 at 1694.873 kb on - strand, within HP15_1598 at 1694.873 kb on - strand, within HP15_1598 at 1694.901 kb on + strand, within HP15_1598 at 1694.903 kb on + strand, within HP15_1598 at 1694.904 kb on - strand, within HP15_1598 at 1694.911 kb on - strand, within HP15_1598 at 1695.028 kb on - strand, within HP15_1598
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,691,528 - HP15_1596 0.20 +1.0 1,691,585 + HP15_1596 0.25 +1.4 1,691,593 - HP15_1596 0.25 -0.6 1,691,792 - HP15_1596 0.42 -0.0 1,691,972 + HP15_1596 0.56 +0.8 1,692,034 - HP15_1596 0.61 -0.1 1,692,293 - HP15_1596 0.83 +0.8 1,692,335 + HP15_1596 0.86 -0.3 1,692,343 - HP15_1596 0.87 -0.5 1,692,385 + +1.4 1,692,462 + -0.2 1,692,467 + +1.8 1,692,469 + +1.8 1,692,529 + -0.1 1,692,541 + -0.4 1,692,665 + HP15_1597 0.11 -0.4 1,692,673 - HP15_1597 0.12 +1.4 1,692,875 - HP15_1597 0.25 +0.1 1,692,906 + HP15_1597 0.27 +1.2 1,692,914 - HP15_1597 0.27 -0.5 1,692,914 - HP15_1597 0.27 +1.5 1,693,018 + HP15_1597 0.34 +0.8 1,693,018 + HP15_1597 0.34 -0.1 1,693,026 - HP15_1597 0.35 +0.5 1,693,026 - HP15_1597 0.35 +0.9 1,693,026 - HP15_1597 0.35 +2.7 1,693,026 - HP15_1597 0.35 -1.2 1,693,135 + HP15_1597 0.42 +1.3 1,693,143 - HP15_1597 0.42 -0.2 1,693,204 + HP15_1597 0.46 +1.5 1,693,344 + HP15_1597 0.55 -0.5 1,693,382 + HP15_1597 0.57 -0.9 1,693,609 - HP15_1597 0.72 -0.0 1,693,687 - HP15_1597 0.77 +1.5 1,693,805 + HP15_1597 0.85 +2.2 1,693,827 - HP15_1597 0.86 -0.8 1,693,867 + HP15_1597 0.89 -0.3 1,693,880 + HP15_1597 0.89 +1.0 1,693,911 + -0.5 1,694,053 + +1.4 1,694,201 + HP15_1598 0.10 -1.1 1,694,205 - HP15_1598 0.11 -1.6 1,694,223 + HP15_1598 0.12 +1.1 1,694,282 - HP15_1598 0.15 +1.4 1,694,284 + HP15_1598 0.16 +1.1 1,694,287 - HP15_1598 0.16 -0.2 1,694,316 + HP15_1598 0.18 -1.2 1,694,413 + HP15_1598 0.24 -0.3 1,694,414 - HP15_1598 0.24 +0.3 1,694,414 - HP15_1598 0.24 -0.1 1,694,519 + HP15_1598 0.30 +0.3 1,694,519 + HP15_1598 0.30 +1.5 1,694,548 - HP15_1598 0.32 +0.1 1,694,619 + HP15_1598 0.37 -0.6 1,694,625 + HP15_1598 0.37 -0.2 1,694,625 + HP15_1598 0.37 +0.5 1,694,625 + HP15_1598 0.37 +1.5 1,694,633 - HP15_1598 0.37 -0.2 1,694,806 + HP15_1598 0.48 -0.7 1,694,814 - HP15_1598 0.49 +2.0 1,694,865 + HP15_1598 0.52 +2.1 1,694,870 + HP15_1598 0.52 -0.6 1,694,873 - HP15_1598 0.52 -0.5 1,694,873 - HP15_1598 0.52 -0.9 1,694,901 + HP15_1598 0.54 +0.2 1,694,903 + HP15_1598 0.54 -0.4 1,694,904 - HP15_1598 0.54 +0.2 1,694,911 - HP15_1598 0.55 -0.5 1,695,028 - HP15_1598 0.62 -0.9
Or see this region's nucleotide sequence