Experiment: L-Phenylalanine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1442 and HP15_1443 are separated by 195 nucleotides HP15_1443 and HP15_1444 are separated by 281 nucleotides HP15_1444 and HP15_1445 are separated by 142 nucleotides HP15_1445 and HP15_1446 are separated by 36 nucleotides
HP15_1442: HP15_1442 - membrane protein, at 1,518,384 to 1,518,932
_1442
HP15_1443: HP15_1443 - conserved hypothetical protein, at 1,519,128 to 1,519,475
_1443
HP15_1444: HP15_1444 - conserved hypothetical protein, at 1,519,757 to 1,520,683
_1444
HP15_1445: HP15_1445 - hypothetical protein, at 1,520,826 to 1,520,963
_1445
HP15_1446: HP15_1446 - ribonucleotide reductase, alpha subunit, at 1,521,000 to 1,521,698
_1446
Position (kb)
1519
1520
1521 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1518.779 kb on - strand, within HP15_1442 at 1518.913 kb on + strand at 1518.921 kb on - strand at 1519.053 kb on + strand at 1519.168 kb on - strand, within HP15_1443 at 1519.168 kb on - strand, within HP15_1443 at 1519.252 kb on - strand, within HP15_1443 at 1519.259 kb on + strand, within HP15_1443 at 1519.332 kb on - strand, within HP15_1443 at 1519.439 kb on + strand, within HP15_1443 at 1519.621 kb on - strand at 1519.665 kb on - strand at 1519.679 kb on + strand at 1519.727 kb on + strand at 1519.750 kb on + strand at 1519.778 kb on + strand at 1519.799 kb on + strand at 1519.799 kb on + strand at 1519.812 kb on + strand at 1519.826 kb on - strand at 1519.914 kb on - strand, within HP15_1444 at 1519.940 kb on - strand, within HP15_1444 at 1519.954 kb on - strand, within HP15_1444 at 1520.040 kb on - strand, within HP15_1444 at 1520.211 kb on - strand, within HP15_1444 at 1520.262 kb on + strand, within HP15_1444 at 1520.283 kb on + strand, within HP15_1444 at 1520.283 kb on + strand, within HP15_1444 at 1520.291 kb on - strand, within HP15_1444 at 1520.304 kb on + strand, within HP15_1444 at 1520.552 kb on - strand, within HP15_1444 at 1520.613 kb on + strand at 1520.613 kb on + strand at 1520.613 kb on + strand at 1520.621 kb on - strand at 1520.621 kb on - strand at 1520.621 kb on - strand at 1520.621 kb on - strand at 1520.799 kb on - strand at 1520.847 kb on - strand, within HP15_1445 at 1521.017 kb on - strand at 1521.027 kb on - strand at 1521.075 kb on - strand, within HP15_1446 at 1521.075 kb on - strand, within HP15_1446 at 1521.432 kb on + strand, within HP15_1446
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine remove 1,518,779 - HP15_1442 0.72 -1.0 1,518,913 + -0.1 1,518,921 - +0.2 1,519,053 + +0.2 1,519,168 - HP15_1443 0.11 +1.4 1,519,168 - HP15_1443 0.11 +1.6 1,519,252 - HP15_1443 0.36 +0.2 1,519,259 + HP15_1443 0.38 -0.4 1,519,332 - HP15_1443 0.59 -0.0 1,519,439 + HP15_1443 0.89 -0.6 1,519,621 - +0.2 1,519,665 - +1.2 1,519,679 + -1.1 1,519,727 + -0.6 1,519,750 + +1.9 1,519,778 + -0.2 1,519,799 + -0.2 1,519,799 + +0.3 1,519,812 + +0.2 1,519,826 - +0.6 1,519,914 - HP15_1444 0.17 -0.5 1,519,940 - HP15_1444 0.20 +0.3 1,519,954 - HP15_1444 0.21 +1.1 1,520,040 - HP15_1444 0.31 +1.6 1,520,211 - HP15_1444 0.49 +1.6 1,520,262 + HP15_1444 0.54 +1.1 1,520,283 + HP15_1444 0.57 +1.7 1,520,283 + HP15_1444 0.57 +0.9 1,520,291 - HP15_1444 0.58 +0.0 1,520,304 + HP15_1444 0.59 +1.9 1,520,552 - HP15_1444 0.86 -0.3 1,520,613 + +0.4 1,520,613 + -1.0 1,520,613 + +1.7 1,520,621 - +1.4 1,520,621 - +3.0 1,520,621 - +1.1 1,520,621 - +1.4 1,520,799 - -0.4 1,520,847 - HP15_1445 0.15 +0.6 1,521,017 - -1.8 1,521,027 - -1.4 1,521,075 - HP15_1446 0.11 +0.2 1,521,075 - HP15_1446 0.11 -1.8 1,521,432 + HP15_1446 0.62 -3.6
Or see this region's nucleotide sequence