Strain Fitness in Marinobacter adhaerens HP15 around HP15_1328

Experiment: L-Phenylalanine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1326 and HP15_1327 are separated by 84 nucleotidesHP15_1327 and HP15_1328 are separated by 196 nucleotidesHP15_1328 and HP15_1329 are separated by 106 nucleotides HP15_1326: HP15_1326 - conserved hypothetical protein, at 1,391,042 to 1,392,823 _1326 HP15_1327: HP15_1327 - hypothetical protein, at 1,392,908 to 1,393,261 _1327 HP15_1328: HP15_1328 - nucleoprotein/polynucleotide-associated enzyme, at 1,393,458 to 1,393,994 _1328 HP15_1329: HP15_1329 - DEAD/DEAH box helicase domain protein, at 1,394,101 to 1,395,474 _1329 Position (kb) 1393 1394Strain fitness (log2 ratio) -2 -1 0 1at 1392.566 kb on + strand, within HP15_1326at 1392.732 kb on + strandat 1392.806 kb on + strandat 1392.988 kb on + strand, within HP15_1327at 1392.990 kb on + strand, within HP15_1327at 1393.061 kb on + strand, within HP15_1327at 1393.062 kb on - strand, within HP15_1327at 1393.092 kb on - strand, within HP15_1327at 1393.180 kb on - strand, within HP15_1327at 1393.232 kb on - strandat 1393.445 kb on + strandat 1393.453 kb on - strandat 1393.577 kb on + strand, within HP15_1328at 1393.733 kb on - strand, within HP15_1328at 1393.845 kb on + strand, within HP15_1328at 1393.868 kb on - strand, within HP15_1328at 1394.165 kb on - strandat 1394.195 kb on - strandat 1394.235 kb on + strandat 1394.289 kb on + strand, within HP15_1329at 1394.320 kb on + strand, within HP15_1329at 1394.415 kb on + strand, within HP15_1329at 1394.415 kb on + strand, within HP15_1329at 1394.473 kb on + strand, within HP15_1329at 1394.512 kb on + strand, within HP15_1329at 1394.535 kb on + strand, within HP15_1329at 1394.629 kb on + strand, within HP15_1329at 1394.635 kb on + strand, within HP15_1329at 1394.662 kb on + strand, within HP15_1329at 1394.717 kb on - strand, within HP15_1329at 1394.754 kb on + strand, within HP15_1329at 1394.889 kb on + strand, within HP15_1329at 1394.932 kb on + strand, within HP15_1329

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine
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1,392,566 + HP15_1326 0.86 +0.7
1,392,732 + +1.5
1,392,806 + -0.7
1,392,988 + HP15_1327 0.23 -1.2
1,392,990 + HP15_1327 0.23 -0.2
1,393,061 + HP15_1327 0.43 +0.5
1,393,062 - HP15_1327 0.44 -0.1
1,393,092 - HP15_1327 0.52 -0.7
1,393,180 - HP15_1327 0.77 +0.8
1,393,232 - -0.3
1,393,445 + +0.7
1,393,453 - -0.3
1,393,577 + HP15_1328 0.22 -0.7
1,393,733 - HP15_1328 0.51 -0.1
1,393,845 + HP15_1328 0.72 -0.8
1,393,868 - HP15_1328 0.76 -0.1
1,394,165 - -0.2
1,394,195 - -0.8
1,394,235 + +1.2
1,394,289 + HP15_1329 0.14 -0.7
1,394,320 + HP15_1329 0.16 -0.7
1,394,415 + HP15_1329 0.23 -0.1
1,394,415 + HP15_1329 0.23 -0.1
1,394,473 + HP15_1329 0.27 -2.1
1,394,512 + HP15_1329 0.30 +1.1
1,394,535 + HP15_1329 0.32 +1.4
1,394,629 + HP15_1329 0.38 -0.5
1,394,635 + HP15_1329 0.39 -0.1
1,394,662 + HP15_1329 0.41 +1.2
1,394,717 - HP15_1329 0.45 +1.7
1,394,754 + HP15_1329 0.48 -0.2
1,394,889 + HP15_1329 0.57 -0.5
1,394,932 + HP15_1329 0.60 -0.3

Or see this region's nucleotide sequence