Strain Fitness in Dechlorosoma suillum PS around Dsui_3255

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3253 and Dsui_3254 are separated by 146 nucleotidesDsui_3254 and Dsui_3255 are separated by 171 nucleotidesDsui_3255 and Dsui_3256 are separated by 35 nucleotidesDsui_3256 and Dsui_3257 overlap by 11 nucleotides Dsui_3253: Dsui_3253 - Protein of unknown function (DUF3579), at 3,493,488 to 3,493,781 _3253 Dsui_3254: Dsui_3254 - ribosomal protein S20, at 3,493,928 to 3,494,194 _3254 Dsui_3255: Dsui_3255 - integral membrane protein MviN, at 3,494,366 to 3,495,910 _3255 Dsui_3256: Dsui_3256 - Raf kinase inhibitor-like protein, YbhB/YbcL family, at 3,495,946 to 3,496,575 _3256 Dsui_3257: Dsui_3257 - bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities, at 3,496,565 to 3,497,710 _3257 Position (kb) 3494 3495 3496Strain fitness (log2 ratio) -2 -1 0 1at 3493.381 kb on + strandat 3493.433 kb on - strandat 3493.440 kb on + strandat 3493.443 kb on - strandat 3493.492 kb on - strandat 3493.596 kb on - strand, within Dsui_3253at 3493.637 kb on + strand, within Dsui_3253at 3493.691 kb on + strand, within Dsui_3253at 3493.691 kb on + strand, within Dsui_3253at 3493.712 kb on - strand, within Dsui_3253at 3493.799 kb on + strandat 3493.838 kb on - strandat 3495.972 kb on - strandat 3496.018 kb on + strand, within Dsui_3256at 3496.040 kb on + strand, within Dsui_3256at 3496.060 kb on - strandat 3496.062 kb on + strand, within Dsui_3256at 3496.102 kb on - strand, within Dsui_3256at 3496.112 kb on - strand, within Dsui_3256at 3496.197 kb on - strand, within Dsui_3256at 3496.230 kb on - strand, within Dsui_3256at 3496.270 kb on + strand, within Dsui_3256at 3496.368 kb on + strand, within Dsui_3256at 3496.577 kb on - strandat 3496.600 kb on - strandat 3496.603 kb on + strandat 3496.617 kb on - strandat 3496.714 kb on + strand, within Dsui_3257at 3496.722 kb on - strand, within Dsui_3257at 3496.724 kb on + strand, within Dsui_3257at 3496.783 kb on - strand, within Dsui_3257at 3496.812 kb on - strand, within Dsui_3257at 3496.843 kb on - strand, within Dsui_3257

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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3,493,381 + +0.1
3,493,433 - +0.3
3,493,440 + +0.1
3,493,443 - +0.3
3,493,492 - +0.3
3,493,596 - Dsui_3253 0.37 +0.3
3,493,637 + Dsui_3253 0.51 +0.2
3,493,691 + Dsui_3253 0.69 +0.3
3,493,691 + Dsui_3253 0.69 -0.3
3,493,712 - Dsui_3253 0.76 +0.3
3,493,799 + +0.0
3,493,838 - -0.6
3,495,972 - +0.3
3,496,018 + Dsui_3256 0.11 -0.0
3,496,040 + Dsui_3256 0.15 -1.3
3,496,060 - -0.7
3,496,062 + Dsui_3256 0.18 -0.8
3,496,102 - Dsui_3256 0.25 -2.3
3,496,112 - Dsui_3256 0.26 +0.3
3,496,197 - Dsui_3256 0.40 +0.3
3,496,230 - Dsui_3256 0.45 -1.7
3,496,270 + Dsui_3256 0.51 -1.4
3,496,368 + Dsui_3256 0.67 -1.3
3,496,577 - -2.0
3,496,600 - +0.3
3,496,603 + -0.7
3,496,617 - -0.7
3,496,714 + Dsui_3257 0.13 -1.3
3,496,722 - Dsui_3257 0.14 +0.3
3,496,724 + Dsui_3257 0.14 -1.7
3,496,783 - Dsui_3257 0.19 -0.5
3,496,812 - Dsui_3257 0.22 -1.5
3,496,843 - Dsui_3257 0.24 -1.5

Or see this region's nucleotide sequence