Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3223 and Dsui_3224 are separated by 11 nucleotides Dsui_3224 and Dsui_3225 overlap by 4 nucleotides
Dsui_3223: Dsui_3223 - Zn-dependent protease with chaperone function, at 3,461,446 to 3,462,717
_3223
Dsui_3224: Dsui_3224 - pterin-4a-carbinolamine dehydratase, at 3,462,729 to 3,463,064
_3224
Dsui_3225: Dsui_3225 - ribosome small subunit-dependent GTPase A, at 3,463,061 to 3,463,948
_3225
Position (kb)
3462
3463
3464 Strain fitness (log2 ratio)
-2
-1
0
1 at 3461.750 kb on + strand, within Dsui_3223 at 3461.758 kb on - strand, within Dsui_3223 at 3461.797 kb on - strand, within Dsui_3223 at 3461.858 kb on + strand, within Dsui_3223 at 3461.858 kb on + strand, within Dsui_3223 at 3461.863 kb on + strand, within Dsui_3223 at 3461.918 kb on + strand, within Dsui_3223 at 3461.962 kb on - strand at 3461.978 kb on + strand, within Dsui_3223 at 3461.986 kb on - strand at 3462.152 kb on + strand, within Dsui_3223 at 3462.219 kb on + strand, within Dsui_3223 at 3462.249 kb on + strand, within Dsui_3223 at 3462.280 kb on - strand, within Dsui_3223 at 3462.286 kb on - strand at 3462.287 kb on + strand, within Dsui_3223 at 3462.319 kb on + strand, within Dsui_3223 at 3462.327 kb on - strand, within Dsui_3223 at 3462.332 kb on - strand, within Dsui_3223 at 3462.366 kb on + strand, within Dsui_3223 at 3462.409 kb on + strand, within Dsui_3223 at 3462.427 kb on + strand, within Dsui_3223 at 3462.464 kb on + strand, within Dsui_3223 at 3462.517 kb on + strand, within Dsui_3223 at 3462.535 kb on + strand, within Dsui_3223 at 3462.556 kb on - strand, within Dsui_3223 at 3462.563 kb on - strand, within Dsui_3223 at 3462.570 kb on + strand, within Dsui_3223 at 3462.605 kb on + strand at 3462.605 kb on + strand at 3462.605 kb on + strand at 3462.687 kb on + strand at 3462.698 kb on + strand at 3462.720 kb on - strand at 3462.740 kb on - strand at 3462.768 kb on - strand, within Dsui_3224 at 3462.962 kb on + strand, within Dsui_3224 at 3462.965 kb on - strand, within Dsui_3224 at 3462.970 kb on - strand, within Dsui_3224 at 3463.072 kb on + strand at 3463.079 kb on + strand at 3463.966 kb on - strand at 3464.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 3,461,750 + Dsui_3223 0.24 -0.5 3,461,758 - Dsui_3223 0.25 +0.3 3,461,797 - Dsui_3223 0.28 -0.7 3,461,858 + Dsui_3223 0.32 +0.5 3,461,858 + Dsui_3223 0.32 -0.7 3,461,863 + Dsui_3223 0.33 +0.9 3,461,918 + Dsui_3223 0.37 -0.4 3,461,962 - +0.3 3,461,978 + Dsui_3223 0.42 -0.4 3,461,986 - +0.3 3,462,152 + Dsui_3223 0.56 -0.7 3,462,219 + Dsui_3223 0.61 +0.3 3,462,249 + Dsui_3223 0.63 -0.2 3,462,280 - Dsui_3223 0.66 +0.3 3,462,286 - +0.3 3,462,287 + Dsui_3223 0.66 -0.8 3,462,319 + Dsui_3223 0.69 -0.0 3,462,327 - Dsui_3223 0.69 +0.3 3,462,332 - Dsui_3223 0.70 +0.3 3,462,366 + Dsui_3223 0.72 +0.7 3,462,409 + Dsui_3223 0.76 +0.3 3,462,427 + Dsui_3223 0.77 -0.0 3,462,464 + Dsui_3223 0.80 +1.0 3,462,517 + Dsui_3223 0.84 -0.1 3,462,535 + Dsui_3223 0.86 +0.2 3,462,556 - Dsui_3223 0.87 -1.7 3,462,563 - Dsui_3223 0.88 -1.3 3,462,570 + Dsui_3223 0.88 +0.2 3,462,605 + -0.3 3,462,605 + +0.3 3,462,605 + +0.5 3,462,687 + -0.2 3,462,698 + -0.4 3,462,720 - -0.7 3,462,740 - +0.3 3,462,768 - Dsui_3224 0.12 -0.7 3,462,962 + Dsui_3224 0.69 -0.4 3,462,965 - Dsui_3224 0.70 -1.3 3,462,970 - Dsui_3224 0.72 -1.3 3,463,072 + -1.4 3,463,079 + -2.6 3,463,966 - -1.3 3,464,058 + +0.4
Or see this region's nucleotide sequence