Strain Fitness in Dechlorosoma suillum PS around Dsui_3156

Experiment: ALP with perchlorate 6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3155 and Dsui_3156 are separated by 176 nucleotidesDsui_3156 and Dsui_3157 are separated by 187 nucleotides Dsui_3155: Dsui_3155 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 3,377,365 to 3,378,363 _3155 Dsui_3156: Dsui_3156 - putative permease, at 3,378,540 to 3,379,313 _3156 Dsui_3157: Dsui_3157 - Fatty acid cis/trans isomerase (CTI), at 3,379,501 to 3,381,852 _3157 Position (kb) 3378 3379 3380Strain fitness (log2 ratio) -3 -2 -1 0 1at 3377.542 kb on + strand, within Dsui_3155at 3377.542 kb on + strand, within Dsui_3155at 3377.774 kb on + strand, within Dsui_3155at 3377.782 kb on - strand, within Dsui_3155at 3377.792 kb on - strand, within Dsui_3155at 3378.002 kb on + strand, within Dsui_3155at 3378.038 kb on + strand, within Dsui_3155at 3378.080 kb on + strand, within Dsui_3155at 3378.080 kb on - strand, within Dsui_3155at 3378.119 kb on + strand, within Dsui_3155at 3378.126 kb on + strand, within Dsui_3155at 3378.178 kb on + strandat 3378.392 kb on + strandat 3378.417 kb on - strandat 3378.417 kb on - strandat 3378.427 kb on - strandat 3378.806 kb on - strand, within Dsui_3156at 3378.892 kb on + strand, within Dsui_3156at 3378.927 kb on - strand, within Dsui_3156at 3378.946 kb on + strand, within Dsui_3156at 3379.059 kb on + strand, within Dsui_3156at 3379.065 kb on - strand, within Dsui_3156at 3379.162 kb on + strand, within Dsui_3156at 3379.170 kb on - strandat 3379.173 kb on - strand, within Dsui_3156at 3379.186 kb on + strand, within Dsui_3156at 3379.270 kb on - strandat 3379.293 kb on + strandat 3379.395 kb on + strandat 3379.463 kb on + strandat 3379.463 kb on + strandat 3379.480 kb on + strandat 3379.480 kb on + strandat 3379.733 kb on + strandat 3379.906 kb on + strand, within Dsui_3157at 3380.159 kb on - strand, within Dsui_3157at 3380.256 kb on - strand, within Dsui_3157at 3380.261 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
remove
3,377,542 + Dsui_3155 0.18 -3.1
3,377,542 + Dsui_3155 0.18 +0.3
3,377,774 + Dsui_3155 0.41 -0.7
3,377,782 - Dsui_3155 0.42 +0.8
3,377,792 - Dsui_3155 0.43 +0.9
3,378,002 + Dsui_3155 0.64 -1.7
3,378,038 + Dsui_3155 0.67 +0.3
3,378,080 + Dsui_3155 0.72 -1.3
3,378,080 - Dsui_3155 0.72 +0.4
3,378,119 + Dsui_3155 0.75 +0.3
3,378,126 + Dsui_3155 0.76 -1.3
3,378,178 + +0.3
3,378,392 + -1.7
3,378,417 - +1.0
3,378,417 - +0.4
3,378,427 - +0.8
3,378,806 - Dsui_3156 0.34 -1.7
3,378,892 + Dsui_3156 0.45 -0.7
3,378,927 - Dsui_3156 0.50 -1.7
3,378,946 + Dsui_3156 0.52 +0.3
3,379,059 + Dsui_3156 0.67 -2.3
3,379,065 - Dsui_3156 0.68 -0.7
3,379,162 + Dsui_3156 0.80 -0.7
3,379,170 - -0.7
3,379,173 - Dsui_3156 0.82 -0.7
3,379,186 + Dsui_3156 0.83 -2.1
3,379,270 - +0.3
3,379,293 + -0.7
3,379,395 + -1.0
3,379,463 + -1.7
3,379,463 + -0.7
3,379,480 + -1.3
3,379,480 + -1.3
3,379,733 + -1.3
3,379,906 + Dsui_3157 0.17 -0.7
3,380,159 - Dsui_3157 0.28 -1.3
3,380,256 - Dsui_3157 0.32 -1.3
3,380,261 - +0.3

Or see this region's nucleotide sequence