Strain Fitness in Dechlorosoma suillum PS around Dsui_3114

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3113 and Dsui_3114 are separated by 96 nucleotidesDsui_3114 and Dsui_3115 overlap by 14 nucleotidesDsui_3115 and Dsui_3116 overlap by 1 nucleotides Dsui_3113: Dsui_3113 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,334,788 to 3,337,169 _3113 Dsui_3114: Dsui_3114 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 3,337,266 to 3,337,868 _3114 Dsui_3115: Dsui_3115 - hypothetical protein, at 3,337,855 to 3,338,169 _3115 Dsui_3116: Dsui_3116 - ATPase family protein associated with various cellular activities (AAA), at 3,338,169 to 3,338,960 _3116 Position (kb) 3337 3338Strain fitness (log2 ratio) -3 -2 -1 0 1at 3336.485 kb on - strand, within Dsui_3113at 3336.487 kb on + strand, within Dsui_3113at 3336.526 kb on + strandat 3336.628 kb on + strand, within Dsui_3113at 3336.654 kb on - strand, within Dsui_3113at 3336.794 kb on - strand, within Dsui_3113at 3336.895 kb on + strand, within Dsui_3113at 3336.903 kb on + strand, within Dsui_3113at 3336.956 kb on + strandat 3336.956 kb on + strandat 3336.991 kb on + strandat 3337.050 kb on + strandat 3337.060 kb on + strandat 3337.164 kb on + strandat 3337.383 kb on + strand, within Dsui_3114at 3337.413 kb on + strand, within Dsui_3114at 3337.426 kb on - strandat 3337.445 kb on - strandat 3337.468 kb on - strandat 3337.518 kb on + strand, within Dsui_3114at 3337.784 kb on - strand, within Dsui_3114at 3337.825 kb on - strandat 3337.850 kb on + strandat 3337.860 kb on - strandat 3337.965 kb on + strand, within Dsui_3115at 3338.083 kb on + strand, within Dsui_3115at 3338.099 kb on + strandat 3338.469 kb on - strandat 3338.760 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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3,336,485 - Dsui_3113 0.71 +0.3
3,336,487 + Dsui_3113 0.71 -1.3
3,336,526 + +0.3
3,336,628 + Dsui_3113 0.77 -2.2
3,336,654 - Dsui_3113 0.78 -0.7
3,336,794 - Dsui_3113 0.84 +0.3
3,336,895 + Dsui_3113 0.88 +0.3
3,336,903 + Dsui_3113 0.89 +0.3
3,336,956 + -3.2
3,336,956 + -1.3
3,336,991 + -1.3
3,337,050 + -1.1
3,337,060 + +0.3
3,337,164 + -0.7
3,337,383 + Dsui_3114 0.19 -2.3
3,337,413 + Dsui_3114 0.24 -0.7
3,337,426 - -0.7
3,337,445 - -0.7
3,337,468 - +0.3
3,337,518 + Dsui_3114 0.42 -2.7
3,337,784 - Dsui_3114 0.86 -0.7
3,337,825 - -0.7
3,337,850 + +0.3
3,337,860 - -1.3
3,337,965 + Dsui_3115 0.35 -2.9
3,338,083 + Dsui_3115 0.72 -1.7
3,338,099 + +0.3
3,338,469 - -0.7
3,338,760 + +0.3

Or see this region's nucleotide sequence