Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3014 and Dsui_3015 overlap by 4 nucleotides Dsui_3015 and Dsui_3016 are separated by 59 nucleotides Dsui_3016 and Dsui_3017 are separated by 159 nucleotides Dsui_3017 and Dsui_3018 are separated by 36 nucleotides
Dsui_3014: Dsui_3014 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 3,229,305 to 3,230,024
_3014
Dsui_3015: Dsui_3015 - hypothetical protein, at 3,230,021 to 3,230,548
_3015
Dsui_3016: Dsui_3016 - hypothetical protein, at 3,230,608 to 3,230,928
_3016
Dsui_3017: Dsui_3017 - uncharacterized conserved small protein containing a coiled-coil domain, at 3,231,088 to 3,231,300
_3017
Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638
_3018
Position (kb)
3230
3231 Strain fitness (log2 ratio)
-2
-1
0
1 at 3229.710 kb on + strand, within Dsui_3014 at 3229.802 kb on - strand at 3229.862 kb on + strand at 3229.870 kb on - strand at 3229.969 kb on - strand at 3229.989 kb on + strand at 3229.990 kb on - strand at 3230.050 kb on - strand at 3230.262 kb on - strand at 3230.266 kb on + strand at 3230.280 kb on - strand at 3230.400 kb on - strand at 3230.510 kb on - strand at 3230.664 kb on - strand, within Dsui_3016 at 3230.664 kb on - strand, within Dsui_3016 at 3230.670 kb on - strand, within Dsui_3016 at 3230.759 kb on - strand, within Dsui_3016 at 3230.769 kb on - strand, within Dsui_3016 at 3230.872 kb on - strand, within Dsui_3016 at 3230.952 kb on - strand at 3230.958 kb on + strand at 3230.966 kb on - strand at 3230.971 kb on - strand at 3230.971 kb on - strand at 3231.076 kb on + strand at 3231.104 kb on - strand at 3231.204 kb on + strand, within Dsui_3017 at 3231.368 kb on + strand at 3231.432 kb on + strand at 3231.468 kb on + strand, within Dsui_3018 at 3231.572 kb on + strand, within Dsui_3018 at 3231.698 kb on + strand, within Dsui_3018 at 3231.743 kb on + strand, within Dsui_3018 at 3231.805 kb on + strand, within Dsui_3018 at 3231.823 kb on - strand, within Dsui_3018 at 3231.905 kb on + strand, within Dsui_3018 at 3231.908 kb on - strand at 3231.913 kb on - strand, within Dsui_3018 at 3231.913 kb on - strand, within Dsui_3018 at 3231.913 kb on - strand at 3231.915 kb on + strand, within Dsui_3018
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 3,229,710 + Dsui_3014 0.56 -0.1 3,229,802 - +0.3 3,229,862 + +1.7 3,229,870 - +0.3 3,229,969 - -0.7 3,229,989 + -0.0 3,229,990 - +0.3 3,230,050 - -1.7 3,230,262 - +0.3 3,230,266 + +0.3 3,230,280 - +0.3 3,230,400 - -0.7 3,230,510 - -1.7 3,230,664 - Dsui_3016 0.17 +0.0 3,230,664 - Dsui_3016 0.17 +0.5 3,230,670 - Dsui_3016 0.19 +0.1 3,230,759 - Dsui_3016 0.47 +0.6 3,230,769 - Dsui_3016 0.50 +0.4 3,230,872 - Dsui_3016 0.82 +0.4 3,230,952 - +1.1 3,230,958 + -1.3 3,230,966 - -0.1 3,230,971 - +0.4 3,230,971 - -0.5 3,231,076 + -0.8 3,231,104 - +0.3 3,231,204 + Dsui_3017 0.54 -0.3 3,231,368 + +0.0 3,231,432 + -0.4 3,231,468 + Dsui_3018 0.10 +0.4 3,231,572 + Dsui_3018 0.18 +0.1 3,231,698 + Dsui_3018 0.28 -0.3 3,231,743 + Dsui_3018 0.31 -0.2 3,231,805 + Dsui_3018 0.36 -1.0 3,231,823 - Dsui_3018 0.37 -2.0 3,231,905 + Dsui_3018 0.44 -0.2 3,231,908 - -0.7 3,231,913 - Dsui_3018 0.44 -1.3 3,231,913 - Dsui_3018 0.44 -0.7 3,231,913 - +0.3 3,231,915 + Dsui_3018 0.44 +0.3
Or see this region's nucleotide sequence