Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2926 and Dsui_2927 are separated by 243 nucleotides Dsui_2927 and Dsui_2928 are separated by 175 nucleotides
Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689
_2926
Dsui_2927: Dsui_2927 - cell wall-associated hydrolase, invasion-associated protein, at 3,130,933 to 3,131,454
_2927
Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652
_2928
Position (kb)
3130
3131
3132 Strain fitness (log2 ratio)
-2
-1
0
1 at 3129.976 kb on - strand, within Dsui_2926 at 3129.995 kb on - strand, within Dsui_2926 at 3130.019 kb on - strand, within Dsui_2926 at 3130.023 kb on + strand at 3130.125 kb on - strand, within Dsui_2926 at 3130.223 kb on + strand at 3130.242 kb on - strand, within Dsui_2926 at 3130.488 kb on + strand at 3130.496 kb on - strand, within Dsui_2926 at 3130.496 kb on - strand, within Dsui_2926 at 3130.516 kb on - strand, within Dsui_2926 at 3130.685 kb on + strand at 3130.693 kb on - strand at 3130.706 kb on - strand at 3130.760 kb on + strand at 3130.775 kb on + strand at 3130.903 kb on - strand at 3130.963 kb on + strand at 3130.974 kb on + strand at 3130.974 kb on + strand at 3130.983 kb on - strand at 3131.200 kb on + strand, within Dsui_2927 at 3131.574 kb on + strand at 3131.582 kb on - strand at 3131.609 kb on - strand at 3131.615 kb on + strand at 3131.628 kb on + strand at 3131.679 kb on + strand at 3131.716 kb on + strand at 3131.729 kb on + strand at 3131.843 kb on + strand, within Dsui_2928 at 3131.843 kb on + strand, within Dsui_2928 at 3131.891 kb on - strand, within Dsui_2928 at 3131.894 kb on + strand, within Dsui_2928 at 3131.907 kb on + strand, within Dsui_2928 at 3131.957 kb on - strand, within Dsui_2928 at 3132.022 kb on - strand, within Dsui_2928 at 3132.045 kb on - strand, within Dsui_2928 at 3132.075 kb on - strand, within Dsui_2928 at 3132.086 kb on + strand, within Dsui_2928 at 3132.094 kb on - strand, within Dsui_2928 at 3132.099 kb on - strand, within Dsui_2928 at 3132.108 kb on + strand, within Dsui_2928 at 3132.178 kb on - strand, within Dsui_2928 at 3132.238 kb on + strand, within Dsui_2928 at 3132.238 kb on + strand, within Dsui_2928 at 3132.241 kb on - strand, within Dsui_2928 at 3132.246 kb on - strand at 3132.246 kb on - strand, within Dsui_2928 at 3132.246 kb on - strand at 3132.246 kb on - strand at 3132.328 kb on + strand at 3132.427 kb on + strand, within Dsui_2928 at 3132.435 kb on - strand, within Dsui_2928
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 3,129,976 - Dsui_2926 0.39 +0.1 3,129,995 - Dsui_2926 0.40 -1.2 3,130,019 - Dsui_2926 0.43 +0.1 3,130,023 + +0.3 3,130,125 - Dsui_2926 0.52 +0.8 3,130,223 + +0.3 3,130,242 - Dsui_2926 0.62 +0.5 3,130,488 + +0.3 3,130,496 - Dsui_2926 0.83 -0.1 3,130,496 - Dsui_2926 0.83 +0.7 3,130,516 - Dsui_2926 0.85 +0.1 3,130,685 + +0.3 3,130,693 - +0.3 3,130,706 - +0.3 3,130,760 + +0.3 3,130,775 + -1.3 3,130,903 - +0.3 3,130,963 + -0.1 3,130,974 + +0.4 3,130,974 + +0.9 3,130,983 - +0.3 3,131,200 + Dsui_2927 0.51 +0.1 3,131,574 + +0.3 3,131,582 - -0.7 3,131,609 - +0.3 3,131,615 + -0.2 3,131,628 + -0.6 3,131,679 + -0.7 3,131,716 + -1.3 3,131,729 + -0.7 3,131,843 + Dsui_2928 0.21 -0.7 3,131,843 + Dsui_2928 0.21 +0.3 3,131,891 - Dsui_2928 0.26 -0.7 3,131,894 + Dsui_2928 0.26 +1.0 3,131,907 + Dsui_2928 0.27 -0.4 3,131,957 - Dsui_2928 0.32 -0.7 3,132,022 - Dsui_2928 0.38 -2.3 3,132,045 - Dsui_2928 0.41 -1.3 3,132,075 - Dsui_2928 0.43 +0.3 3,132,086 + Dsui_2928 0.45 -0.7 3,132,094 - Dsui_2928 0.45 -1.7 3,132,099 - Dsui_2928 0.46 -2.3 3,132,108 + Dsui_2928 0.47 -1.2 3,132,178 - Dsui_2928 0.54 +0.3 3,132,238 + Dsui_2928 0.59 -0.7 3,132,238 + Dsui_2928 0.59 +0.5 3,132,241 - Dsui_2928 0.60 +0.3 3,132,246 - +0.3 3,132,246 - Dsui_2928 0.60 -2.0 3,132,246 - -1.3 3,132,246 - +0.3 3,132,328 + -0.7 3,132,427 + Dsui_2928 0.78 -0.0 3,132,435 - Dsui_2928 0.79 +0.3
Or see this region's nucleotide sequence