Strain Fitness in Dechlorosoma suillum PS around Dsui_2888

Experiment: ALP with perchlorate 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2886 and Dsui_2887 overlap by 1 nucleotidesDsui_2887 and Dsui_2888 overlap by 4 nucleotidesDsui_2888 and Dsui_2889 are separated by 42 nucleotidesDsui_2889 and Dsui_2890 are separated by 53 nucleotides Dsui_2886: Dsui_2886 - intracellular septation protein A, at 3,084,168 to 3,084,707 _2886 Dsui_2887: Dsui_2887 - hypothetical protein, at 3,084,707 to 3,085,009 _2887 Dsui_2888: Dsui_2888 - stress-induced morphogen, at 3,085,006 to 3,085,278 _2888 Dsui_2889: Dsui_2889 - parvulin-like peptidyl-prolyl isomerase, at 3,085,321 to 3,086,121 _2889 Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103 _2890 Position (kb) 3085 3086Strain fitness (log2 ratio) -2 -1 0 1at 3084.040 kb on - strandat 3084.664 kb on + strandat 3084.820 kb on - strandat 3084.829 kb on + strand, within Dsui_2887at 3084.906 kb on + strand, within Dsui_2887at 3084.907 kb on + strand, within Dsui_2887at 3084.970 kb on + strand, within Dsui_2887at 3085.133 kb on + strand, within Dsui_2888at 3085.141 kb on - strand, within Dsui_2888at 3085.161 kb on - strand, within Dsui_2888at 3085.269 kb on - strandat 3085.305 kb on + strandat 3085.373 kb on - strandat 3085.478 kb on + strand, within Dsui_2889at 3085.630 kb on + strand, within Dsui_2889at 3085.718 kb on - strand, within Dsui_2889at 3085.745 kb on - strandat 3085.826 kb on + strand, within Dsui_2889at 3085.870 kb on + strand, within Dsui_2889at 3086.024 kb on + strand, within Dsui_2889at 3086.024 kb on + strand, within Dsui_2889at 3086.034 kb on + strand, within Dsui_2889

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM
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3,084,040 - -0.4
3,084,664 + -0.4
3,084,820 - +0.4
3,084,829 + Dsui_2887 0.40 +0.1
3,084,906 + Dsui_2887 0.66 +0.0
3,084,907 + Dsui_2887 0.66 +0.8
3,084,970 + Dsui_2887 0.87 -0.6
3,085,133 + Dsui_2888 0.47 +0.3
3,085,141 - Dsui_2888 0.49 -0.6
3,085,161 - Dsui_2888 0.57 -1.9
3,085,269 - +0.4
3,085,305 + +0.1
3,085,373 - -0.6
3,085,478 + Dsui_2889 0.20 +0.0
3,085,630 + Dsui_2889 0.39 +0.1
3,085,718 - Dsui_2889 0.50 +0.4
3,085,745 - -0.6
3,085,826 + Dsui_2889 0.63 -0.1
3,085,870 + Dsui_2889 0.69 -0.1
3,086,024 + Dsui_2889 0.88 -0.1
3,086,024 + Dsui_2889 0.88 -0.4
3,086,034 + Dsui_2889 0.89 -0.1

Or see this region's nucleotide sequence