Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2856 and Dsui_2857 are separated by 101 nucleotides Dsui_2857 and Dsui_2858 overlap by 8 nucleotides
Dsui_2856: Dsui_2856 - methyl-accepting chemotaxis protein, at 3,044,547 to 3,046,568
_2856
Dsui_2857: Dsui_2857 - lipoprotein releasing system, ATP-binding protein, at 3,046,670 to 3,047,419
_2857
Dsui_2858: Dsui_2858 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 3,047,412 to 3,048,659
_2858
Position (kb)
3044
3045
3046
3047 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3043.547 kb on - strand at 3043.548 kb on - strand at 3043.553 kb on - strand at 3043.592 kb on - strand at 3043.593 kb on - strand at 3043.593 kb on - strand at 3043.593 kb on - strand at 3043.593 kb on - strand at 3043.603 kb on - strand at 3043.603 kb on - strand at 3043.603 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.645 kb on - strand at 3043.653 kb on - strand at 3043.653 kb on - strand at 3043.653 kb on - strand at 3043.656 kb on - strand at 3043.659 kb on - strand at 3043.659 kb on - strand at 3043.660 kb on - strand at 3043.660 kb on - strand at 3043.664 kb on - strand at 3043.664 kb on - strand at 3043.664 kb on - strand at 3043.686 kb on - strand at 3043.687 kb on - strand at 3043.709 kb on - strand at 3043.709 kb on - strand at 3043.709 kb on - strand at 3043.709 kb on - strand at 3043.709 kb on - strand at 3043.714 kb on - strand at 3043.723 kb on - strand at 3043.723 kb on - strand at 3043.723 kb on - strand at 3043.723 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.737 kb on - strand at 3043.747 kb on - strand at 3043.780 kb on - strand at 3043.806 kb on - strand at 3043.807 kb on + strand at 3043.910 kb on - strand at 3043.930 kb on + strand at 3043.945 kb on - strand at 3044.212 kb on - strand at 3044.313 kb on + strand at 3044.316 kb on - strand at 3044.331 kb on + strand at 3044.508 kb on - strand at 3044.539 kb on + strand at 3044.547 kb on - strand at 3044.592 kb on - strand at 3044.685 kb on - strand at 3044.750 kb on - strand, within Dsui_2856 at 3044.764 kb on + strand at 3044.782 kb on - strand, within Dsui_2856 at 3044.858 kb on + strand at 3045.138 kb on + strand, within Dsui_2856 at 3045.280 kb on - strand, within Dsui_2856 at 3045.593 kb on + strand, within Dsui_2856 at 3045.593 kb on + strand, within Dsui_2856 at 3045.601 kb on - strand, within Dsui_2856 at 3045.630 kb on - strand, within Dsui_2856 at 3045.660 kb on + strand, within Dsui_2856 at 3045.660 kb on + strand at 3045.706 kb on + strand, within Dsui_2856 at 3045.714 kb on - strand, within Dsui_2856 at 3045.714 kb on - strand, within Dsui_2856 at 3045.714 kb on - strand, within Dsui_2856 at 3045.783 kb on - strand, within Dsui_2856 at 3045.829 kb on - strand, within Dsui_2856 at 3046.044 kb on + strand at 3046.081 kb on - strand, within Dsui_2856 at 3046.091 kb on + strand, within Dsui_2856 at 3046.111 kb on - strand, within Dsui_2856 at 3046.117 kb on - strand, within Dsui_2856 at 3046.136 kb on - strand, within Dsui_2856 at 3046.302 kb on - strand, within Dsui_2856 at 3046.355 kb on + strand at 3046.363 kb on - strand, within Dsui_2856 at 3046.461 kb on + strand at 3046.518 kb on + strand at 3046.530 kb on + strand at 3046.538 kb on - strand at 3046.538 kb on - strand at 3046.585 kb on - strand at 3046.590 kb on - strand at 3046.590 kb on - strand at 3047.417 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 3,043,547 - -0.6 3,043,548 - -0.6 3,043,553 - -1.6 3,043,592 - +0.4 3,043,593 - -0.6 3,043,593 - -1.2 3,043,593 - -1.2 3,043,593 - +0.4 3,043,603 - +0.4 3,043,603 - -2.9 3,043,603 - +0.4 3,043,645 - +0.4 3,043,645 - -2.2 3,043,645 - -2.2 3,043,645 - -1.9 3,043,645 - +0.4 3,043,645 - -1.2 3,043,645 - -0.6 3,043,645 - -2.9 3,043,645 - -0.6 3,043,645 - +0.4 3,043,653 - -1.2 3,043,653 - -1.2 3,043,653 - +0.4 3,043,656 - +0.4 3,043,659 - +0.4 3,043,659 - -1.9 3,043,660 - -1.2 3,043,660 - -0.6 3,043,664 - +0.4 3,043,664 - -0.6 3,043,664 - -0.6 3,043,686 - -0.6 3,043,687 - +0.4 3,043,709 - -1.2 3,043,709 - +0.4 3,043,709 - -0.6 3,043,709 - -0.6 3,043,709 - -2.2 3,043,714 - +0.4 3,043,723 - -1.3 3,043,723 - +0.4 3,043,723 - -0.6 3,043,723 - -1.2 3,043,737 - -0.6 3,043,737 - +0.4 3,043,737 - -2.6 3,043,737 - -1.6 3,043,737 - -1.2 3,043,737 - -1.2 3,043,747 - -2.2 3,043,780 - -1.2 3,043,806 - -1.2 3,043,807 + -0.6 3,043,910 - +0.4 3,043,930 + -1.2 3,043,945 - -2.2 3,044,212 - +0.4 3,044,313 + +0.4 3,044,316 - +0.4 3,044,331 + -1.9 3,044,508 - -0.0 3,044,539 + -3.2 3,044,547 - -0.3 3,044,592 - -0.3 3,044,685 - +0.0 3,044,750 - Dsui_2856 0.10 -0.0 3,044,764 + +0.4 3,044,782 - Dsui_2856 0.12 -0.1 3,044,858 + -0.6 3,045,138 + Dsui_2856 0.29 +0.4 3,045,280 - Dsui_2856 0.36 -0.1 3,045,593 + Dsui_2856 0.52 -0.6 3,045,593 + Dsui_2856 0.52 -0.6 3,045,601 - Dsui_2856 0.52 +0.2 3,045,630 - Dsui_2856 0.54 -0.5 3,045,660 + Dsui_2856 0.55 -0.6 3,045,660 + +0.4 3,045,706 + Dsui_2856 0.57 -0.6 3,045,714 - Dsui_2856 0.58 +0.2 3,045,714 - Dsui_2856 0.58 -0.5 3,045,714 - Dsui_2856 0.58 +0.1 3,045,783 - Dsui_2856 0.61 +0.1 3,045,829 - Dsui_2856 0.63 -0.1 3,046,044 + +0.4 3,046,081 - Dsui_2856 0.76 -1.2 3,046,091 + Dsui_2856 0.76 -1.2 3,046,111 - Dsui_2856 0.77 -0.2 3,046,117 - Dsui_2856 0.78 -0.5 3,046,136 - Dsui_2856 0.79 -0.1 3,046,302 - Dsui_2856 0.87 -0.0 3,046,355 + +0.4 3,046,363 - Dsui_2856 0.90 -0.6 3,046,461 + -0.6 3,046,518 + -0.6 3,046,530 + -1.2 3,046,538 - -0.5 3,046,538 - -0.3 3,046,585 - -0.1 3,046,590 - +0.4 3,046,590 - -0.3 3,047,417 - -0.1
Or see this region's nucleotide sequence