Experiment: ALP with perchlorate 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2816 and Dsui_2817 are separated by 184 nucleotides Dsui_2817 and Dsui_2818 overlap by 1 nucleotides Dsui_2818 and Dsui_2819 overlap by 31 nucleotides
Dsui_2816: Dsui_2816 - (p)ppGpp synthetase, RelA/SpoT family, at 2,991,497 to 2,993,719
_2816
Dsui_2817: Dsui_2817 - DMT(drug/metabolite transporter) superfamily permease, at 2,993,904 to 2,994,830
_2817
Dsui_2818: Dsui_2818 - hypothetical protein, at 2,994,830 to 2,995,630
_2818
Dsui_2819: Dsui_2819 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,995,600 to 2,996,373
_2819
Position (kb)
2993
2994
2995 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2993.021 kb on - strand, within Dsui_2816 at 2993.573 kb on - strand at 2993.687 kb on - strand at 2993.702 kb on - strand at 2993.876 kb on + strand at 2993.876 kb on + strand at 2993.901 kb on + strand at 2993.929 kb on - strand at 2993.982 kb on + strand at 2994.072 kb on + strand, within Dsui_2817 at 2994.180 kb on + strand, within Dsui_2817 at 2994.180 kb on + strand, within Dsui_2817 at 2994.183 kb on + strand, within Dsui_2817 at 2994.185 kb on + strand, within Dsui_2817 at 2994.193 kb on - strand, within Dsui_2817 at 2994.315 kb on - strand at 2994.358 kb on + strand, within Dsui_2817 at 2994.413 kb on - strand at 2994.740 kb on + strand at 2994.784 kb on + strand at 2994.789 kb on + strand at 2994.859 kb on + strand at 2994.870 kb on + strand at 2995.031 kb on + strand, within Dsui_2818 at 2995.039 kb on - strand, within Dsui_2818 at 2995.145 kb on + strand, within Dsui_2818 at 2995.164 kb on - strand, within Dsui_2818 at 2995.290 kb on + strand at 2995.297 kb on - strand, within Dsui_2818 at 2995.310 kb on + strand, within Dsui_2818 at 2995.464 kb on - strand, within Dsui_2818 at 2995.519 kb on + strand, within Dsui_2818 at 2995.527 kb on - strand, within Dsui_2818 at 2995.562 kb on - strand at 2995.694 kb on + strand, within Dsui_2819 at 2995.821 kb on - strand, within Dsui_2819
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with perchlorate 6 mM remove 2,993,021 - Dsui_2816 0.69 -2.3 2,993,573 - -3.3 2,993,687 - -3.7 2,993,702 - -1.1 2,993,876 + -0.5 2,993,876 + +0.5 2,993,901 + +0.5 2,993,929 - +0.5 2,993,982 + -3.5 2,994,072 + Dsui_2817 0.18 -0.1 2,994,180 + Dsui_2817 0.30 -0.5 2,994,180 + Dsui_2817 0.30 -0.8 2,994,183 + Dsui_2817 0.30 +0.5 2,994,185 + Dsui_2817 0.30 +0.9 2,994,193 - Dsui_2817 0.31 -1.1 2,994,315 - -0.5 2,994,358 + Dsui_2817 0.49 -1.8 2,994,413 - +0.5 2,994,740 + -2.1 2,994,784 + +0.5 2,994,789 + +0.5 2,994,859 + +0.5 2,994,870 + -0.5 2,995,031 + Dsui_2818 0.25 +0.5 2,995,039 - Dsui_2818 0.26 -0.5 2,995,145 + Dsui_2818 0.39 +0.5 2,995,164 - Dsui_2818 0.42 +0.5 2,995,290 + +0.5 2,995,297 - Dsui_2818 0.58 +0.5 2,995,310 + Dsui_2818 0.60 -1.5 2,995,464 - Dsui_2818 0.79 -1.5 2,995,519 + Dsui_2818 0.86 -0.5 2,995,527 - Dsui_2818 0.87 -0.5 2,995,562 - -1.9 2,995,694 + Dsui_2819 0.12 -1.9 2,995,821 - Dsui_2819 0.29 -1.9
Or see this region's nucleotide sequence